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Protein Overview: bip2-PA

General Information:
Name(s) found: bip2-PA / FBpp0088179 [FlyBase]
Description(s) found:
Found 20 descriptions.
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  • The gene bip2 is referred to in FlyBase by the symbol Dmel\bip2 (CG2009, FBgn0026262). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is 4:480508..487450. It has the cytological map location 102C1. It is reported to have molecular function</span>: general RNA polymerase II transcription factor activity. It is reported to be involved in the biological process</span>: regulation of transcription from RNA polymerase II promoter. 6 alleles are reported. No phenotypic data is available. It has one annotated transcript and one annotated polypeptide. [FlyBase]
    • Organism: Drosophila melanogaster
    Length: 1406 amino acids

    Gene Ontology:
    Cellular Component: transcription factor TFIID complex [NAS]
    Biological Process: regulation of transcription from RNA polymerase II promoter [NAS]
    Molecular Function: zinc ion binding [IEA]
    protein binding [IEA]
    general RNA polymerase II transcription factor activity [NAS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMADRYASDL ALVVVAQITQ TIGYSCTLSA PLELLQDILQ KFVQEFARDM HRHMEHANRI  60
   61 EPNLKDARLS IKNLSINVQE LLDYIGNVEP VGFIRDVPQF PIGKSVNMNF LKPGSAETLT 120
  121 RPVYIFEYLP PMQDPELREI PADVQKEFSE KQEFCSKAEY SSTNAADKLG AKHIDSISPN 180
  181 TVINFRSNAF ELDVGSSVRE MSSVVMTTGG FISPAIEGKL PEDIIPDIVE KFLGLDAPFS 240
  241 PTIIVNSLQK SPQLALSDRD KTVNPRKIIP SETKIFKQNA ALLTSGHSES SIIYASNNHT 300
  301 MLTVTTPKKN RKQKHDLICE PGQSELLTNP FEKAQEKSQR KALKMYKQTS KNQRDSSINQ 360
  361 IQNMKKLKKK FNRGSFDPNK KHLEKIFKKQ SKLKQNDLQL DIDEKHFLQN SQTTSGLAIK 420
  421 ANSNENALQA DIPSQPPTVT SQIENNFRNS IYPVQPSVIQ QTQVLLAEKK SGSEPERSKL 480
  481 DIFKKISKPR TPRPDIGATL VPPGTGVSVF GSTMTPSALI SLPSGTTITP TPSLGLNSEN 540
  541 KNVPSMKINP CNIFDGTIPL TKAGVEMSII DSPKPKKRGR KPGGKNVIKQ TNVVSQPLIN 600
  601 KVERKKSSQA ITLPLSSSPM IITQSSLNVS PPTEPLNLCN TEQPSNNFLS NLYAKEKKDR 660
  661 KKYKSLPENV MQLDKSCSPE KASTLHNSIR PTKQNNDVQC SDKFVTISNA LSNASIYPGI 720
  721 QTGMVPLLPL LQFPPRPGLI PTGPGLFPAV TGLVGFGNHG NRIPISPFID YPGPEESVAD 780
  781 TVRCPPIKDS PVTDSDQFLS RSSTQTDLQM DRNYCNVAPL VPDSMKFAEC KSVSCASTIL 840
  841 ENPSAQATSK INTKPLLEAS GNPDDPIEVS DDSDESMHNR QMVQRKTPIS SPTYVKTSFA 900
  901 ELNPSSFTSA ASNGEEKSKM DLRNIVSLSS NEPLKKFKKL VKQSFPDVKS VPHTPASHSS 960
  961 FPQFNLPNFM GGDKFSLAGG ADLIPLSRVS DSEYSSKIVP FSSLGGTIPN QIKISEEHNI1020
 1021 FSTFSNYEDI TITPTGLTSL EPKMRKHHKK LKKVKEGKNK KKKEKKDKSK KADQIGLPSF1080
 1081 KSDRKIKAND KRQKKEKKKD KDKQILVHIP DDTEEFDKVP LANNDEPVLK SSSMTINPSL1140
 1141 GAATSGISPN QIPKLTLKLS GKSTLFSSSE KEMTDAGKLK QTTILSSENK KRERDNSPEL1200
 1201 ARFSPLVTGP PKNKQSETLH LGNSSTAVLP VPSPVAVRAV QLPVSQTSSN SAGWLSNPNN1260
 1261 SNTASSTLSA SSVLLPQQLM LAPHTIMNNF VPAMCNSTGT VSKSGLCSSP PNTSEENANA1320
 1321 MQIAESSRPS SYVDAEGNRI WICPACGKVD DGSAMIGCDG CDAWYHWICV GITFAPKDND1380
 1381 DWFCRVCVTK KRIHGSEKKK RRNKKK

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..92] FFAS03 0.969 Histone H4
    2 View Details [93..158] deduced N/A No confident structure predictions are available.
    3 View Details [159..236] deduced N/A No confident structure predictions are available.
    4 View Details [237..450] deduced N/A No confident structure predictions are available.
    5 View Details [451..645] deduced N/A No confident structure predictions are available.
    6 View Details [646..812] MSA 1.172987 View MSA. No confident structure predictions are available.
    7 View Details [813..875] deduced N/A No confident structure predictions are available.
    8 View Details [876..994] MSA 2.168986 View MSA. No confident structure predictions are available.
    9 View Details [995..1230] deduced N/A No confident structure predictions are available.
    10 View Details [1231..1329] deduced N/A No confident structure predictions are available.
    11 View Details [1330..1406] PSI-BLAST 12.522879 No description for 2e6sA was found.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.67

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle