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Protein Overview: gammaCop-PB

General Information:
Name(s) found: gammaCop-PB / FBpp0085155 [FlyBase]
Description(s) found:
Found 21 descriptions.
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  • The gene Ã?&#142;Ã?³-coatomer protein is referred to in FlyBase by the symbol Dmel\Ã?&#142;Ã?³Cop (CG1528, FBgn0028968). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is 3R:27397865..27401429. It has the cytological map location 100C6. An electronic pipeline based on InterPro domains suggests that it has the molecular function</span>: protein binding; structural molecule activity. There is experimental evidence that it is involved in the biological process</span>: cytokinesis; protein secretion; open tracheal system development; branch fusion, open tracheal system; lumen formation, open tracheal system; chitin-based embryonic cuticle biosynthetic process; phagocytosis, engulfment. 31 alleles are reported. The phenotypes of these alleles are annotated with: embryonic/first instar larval cuticle; embryonic/larval lateral trunk; embryonic/larval dorsal trunk; embryonic nervous system; embryonic/larval dorsal branch; denticle belt. It has 3 annotated transcripts and 3 annotated polypeptides. [FlyBase]
    • Organism: Drosophila melanogaster
    Length: 883 amino acids

    Gene Ontology:
    Cellular Component: Golgi apparatus [IDA]
    COPI vesicle coat [ISS][NAS]
    Biological Process: phagocytosis, engulfment [IMP]
    retrograde vesicle-mediated transport, Golgi to ER [ISS][NAS]
    chitin-based embryonic cuticle biosynthetic process [IMP]
    cytokinesis [IMP]
    intracellular protein transport [IEA]
    branch fusion, open tracheal system [IMP]
    protein secretion [IMP]
    lumen formation, open tracheal system [IMP]
    open tracheal system development [IMP]
    Molecular Function: protein binding [IEA]
    structural molecule activity [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNYFSLTSHK KHRGHPSAGP SNAYQNLEKT SVLQETRTFN ETPVNPRKCI HILTKILYLI  60
   61 NQGEQLVARE ATDCFFAMTK LFQSKDVVLR RMVYLGIKEL SSIAEDVIIV TSSLTKDMTG 120
  121 KEDLYRAAAI RALCSITDNT MLQAVERYMK QCIVDKNAAV SCAALVSSLR LANTAGDVVK 180
  181 RWANEAQEAL NSDNIMVQYH ALGLLYHIRK SDRLAVSKLV NKLTRGSLKS PYAVCMLIRI 240
  241 ACKLIEEEDI PSEELSDSPL FTFIESCLRH KSEMVIYEAA HAIVNLKNTN PRMLSPAFSI 300
  301 LQLFCSSPKA TLRFAAVRTL NKVAMTHPAA VTTCNLDLEG LITDSNRSVA TLAITTLLKT 360
  361 GAESSVERLM KQISTFVAEI SDEFKVVVVQ AICALCTKYP RKHTVLMNFL SGMLREEGGL 420
  421 EYKTSIVDTI ITIIEENADA KESGLSHLCE FIEDCEHVSL AVRILHLLGK EGPFAATPSK 480
  481 YIRFIYNRVI LESPIVRAAA VTAMAQFGAS CPALLSNILV LLGRCQMDPD DEVRDRATYY 540
  541 LSILNSERPE LYKNYIIERE NCSLALLEKS LVEHLNGDVD TRFDISIVPK AAIVKPVIAN 600
  601 DVMLVTSSAP RPPKITREEE SAARLAQLPG IQVLGPIHRS TAPIQLTESE TEYTVQCIKH 660
  661 IFGQHVVFQF DCLNTLSDQI LENVRVELTL PEGFTTRAVI PCPKLPYNDL QTTFVIVEFP 720
  721 PDAANSIATF GATLRFVVKD CDPNTGEPES EEGYDDEYML EDLELTVADQ IQKTRKNNFQ 780
  781 VSWDAADSEE WLQAEDTFVL SAVTTLQDAV NTIVKILGLG AANLSENVPE GTHLHTLLCS 840
  841 GTFRGGAEIL VRAKLALSEG VTLNLTVRST DQDVAELITA AIG

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..595] PSI-BLAST 93.522879 AP1 clathrin adaptor core
    2 View Details [596..883] PSI-BLAST 77.0 Structural Identification of a conserved appendage domain in the carboxyl-terminus of the COPI gamma-subunit.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.97

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle