YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: Npc2h-PA, FBpp02...

General Information:
Name(s) found: FBpp0297401 [FlyBase]
Npc2h-PA / FBpp0085084 [FlyBase]
Description(s) found:
SHOW ONLY BEST
  • gi|7301977|gb|AAF57082.1| CG11315, isoform A [Drosophila melanogaster] [NCBI NR]
  • gi|21358239|ref|NP_651824.1| CG11315, isoform A [Drosophila melanogaster] [NCBI NR]
  • gi|17946529|gb|AAL49296.1| RH04252p [Drosophila melanogaster] [NCBI NR]
  • type=protein; loc=3R:complement(26571509..26571982); ID=FBpp0297401; name=Npc2h-PC; parent=FBgn0039801,FBtr0306292; dbxref=REFSEQ:NP_001247376,GB_protein:AFH06693,FlyBase:FBpp0297401,FlyBase_Annotation_IDs:CG11315-PC; MD5=14e4add7079b424c00ea6189dcd5066d; length=157; release=r5.56; species=Dmel; [FlyBase]
  • The gene Niemann-Pick type C-2h is referred to in FlyBase by the symbol Dmel\Npc2h (CG11315, FBgn0039801). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is 3R:26571201..26572010. It has the cytological map location 100A3. Its molecular function is unknown. The biological processes in which it is involved are not known. 3 alleles are reported. No phenotypic data is available. It has 2 annotated transcripts and 2 annotated polypeptides. [FlyBase]
  • >CG11315-PA translation from_gene[CG11315 CG11315 FBgn0039801] seq_release:3 mol_weight=17552 cds_boundaries:(3R:26,560,878..26,561,348[-]) aa_length:157 transcript_info:[CG11315-RA seq_release:3] gene_info:[gene symbol:CG11315 FBgn0039801 gene_boundar [hmr_yeast5_DM3-1_pombe.fasta]
  • (Q9VA41) CG11315 protein (RH04252p) [DrosMelano7227.FASTAC.txt]
  • (AE003775) CG11315 gene product [Drosophila melanogaster] [yeastflysequest.fasta]
  • CG11315-PA, isoform A [Drosophila melanogaster]gi|17946529|gb|AAL49296.1| RH04252p [Drosophila melanogaster]gi|21358239|ref|NP_651824.1| CG11315-PA [Drosophila melanogaster] [nrdb_11152004_Chlamydomonas]
  • type=protein; loc=3R:complement(26571509..26571982); ID=FBpp0085084; name=CG11315-PA; parent=FBgn0039801,FBtr0085722; dbxref=FlyBase:FBpp0085084,FlyBase_Annotation_IDs:CG11315-PA,GB_protein:AAF57082.1,REFSEQ:NP_651824,GB_protein:AAF57082; MD5=14e4add7079b [fly-100309-contam.fasta]
  • CG11315-PA, isoform A [Drosophila melanogaster] [nr-271106-contam.fasta]
  • RH04252p [Drosophila melanogaster] [nr-271106-contam.fasta]
  • type=protein; loc=3R:complement(26571509..26571982); ID=FBpp0085084; name=CG11315-PA; parent=FBgn0039801,FBtr0085722; dbxref=FlyBase:FBpp0085084,FlyBase_Annotation_IDs:CG11315-PA,GB_protein:AAF57082.1,REFSEQ:NP_651824,GB_protein:AAF57082; MD5=14e4add7079b424c00ea6189dcd5066d; length=157; release=r5.16; species=Dmel; [fly-contam-His-TEV-Tub4complex.fasta]
  • type=protein; loc=3R:complement(26571509..26571982); ID=FBpp0085084; name=Npc2h-PA; parent=FBgn0039801,FBtr0085722; dbxref=FlyBase:FBpp0085084,FlyBase_Annotation_IDs:CG11315-PA,GB_protein:AAF57082.1,REFSEQ:NP_651824,GB_protein:AAF57082; MD5=14e4add7079b424c00ea6189dcd5066d; length=157; release=r5.21; species=Dmel; [Other_drosophila_na_09-09-2009_reversed.fasta]
  • Niemann-Pick type C-2h, isoform A OS=Drosophila melanogaster GN=Npc2h PE=2 SV=1 [UniProt_drosophila_07-01-2011_reversed.fasta]
  • type=protein; loc=3R:complement(26571509..26571982); ID=FBpp0085084; name=Npc2h-PA; parent=FBgn0039801,FBtr0085722; dbxref=FlyBase:FBpp0085084,FlyBase_Annotation_IDs:CG11315-PA,GB_protein:AAF57082.1,REFSEQ:NP_651824,GB_protein:AAF57082,FlyMine:FBpp0085084,modMine:FBpp0085084; MD5=14e4add7079b424c00ea6189dcd5066d; length=157; release=r5.46; species=Dmel; [fly-062812-sfps-sandra-contam.fasta]
  • type=protein; loc=3R:complement(26571509..26571982); ID=FBpp0297401; name=Npc2h-PC; parent=FBgn0039801,FBtr0306292; dbxref=REFSEQ:NP_001247376,GB_protein:AFH06693,FlyBase:FBpp0297401,FlyBase_Annotation_IDs:CG11315-PC; MD5=14e4add7079b424c00ea6189dcd5066d; length=157; release=r5.46; species=Dmel; [fly-062812-sfps-sandra-contam.fasta]
  • type=protein; loc=3R:complement(30745787..30746260); ID=FBpp0085084; name=Npc2h-PA; parent=FBgn0039801,FBtr0085722; dbxref=FlyBase:FBpp0085084,FlyBase_Annotation_IDs:CG11315-PA,GB_protein:AAF57082.1,REFSEQ:NP_651824,GB_protein:AAF57082,FlyMine:FBpp0085084,modMine:FBpp0085084; MD5=14e4add7079b424c00ea6189dcd5066d; length=157; release=r6.02; species=Dmel; [fly-2014-05-contam.fasta]
  • type=protein; loc=3R:complement(30745787..30746260); ID=FBpp0297401; name=Npc2h-PC; parent=FBgn0039801,FBtr0306292; dbxref=REFSEQ:NP_001247376,GB_protein:AFH06693,FlyBase:FBpp0297401,FlyBase_Annotation_IDs:CG11315-PC; MD5=14e4add7079b424c00ea6189dcd5066d; length=157; release=r6.02; species=Dmel; [fly-2014-05-contam.fasta]
  • type=protein; loc=3R:complement(30745787..30746260); ID=FBpp0085084; name=Npc2h-PA; parent=FBgn0039801,FBtr0085722; dbxref=FlyBase:FBpp0085084,FlyBase_Annotation_IDs:CG11315-PA,GB_protein:AAF57082.1,REFSEQ:NP_651824,GB_protein:AAF57082,FlyMine:FBpp0085084,modMine:FBpp0085084; MD5=14e4add7079b424c00ea6189dcd5066d; length=157; release=r6.07; species=Dmel; [fly-08202015-contam.fasta]
  • type=protein; loc=3R:complement(30745787..30746260); ID=FBpp0297401; name=Npc2h-PC; parent=FBgn0039801,FBtr0306292; dbxref=REFSEQ:NP_001247376,GB_protein:AFH06693,FlyBase:FBpp0297401,FlyBase_Annotation_IDs:CG11315-PC; MD5=14e4add7079b424c00ea6189dcd5066d; length=157; release=r6.07; species=Dmel; [fly-08202015-contam.fasta]
  • Niemann-Pick type C-2h, isoform A OS=Drosophila melanogaster GN=Npc2h PE=1 SV=1 [DROME.fasta.20160308]
  • FBpp0085084 type=protein; loc=3R:complement(30745787..30746260); ID=FBpp0085084; name=Npc2h-PA; parent=FBgn0039801,FBtr0085722; dbxref=FlyBase:FBpp0085084,FlyBase_Annotation_IDs:CG11315-PA,GB_protein:AAF57082.1,REFSEQ:NP_651824,GB_protein:AAF57082,FlyMine:FBpp0085084,modMine:FBpp0085084; MD5=14e4add7079b424c00ea6189dcd5066d; length=157; release=r6.09; species=Dmel; [dmel-all-translation-r6.09.fasta]
  • FBpp0297401 type=protein; loc=3R:complement(30745787..30746260); ID=FBpp0297401; name=Npc2h-PC; parent=FBgn0039801,FBtr0306292; dbxref=REFSEQ:NP_001247376,GB_protein:AFH06693,FlyBase:FBpp0297401,FlyBase_Annotation_IDs:CG11315-PC; MD5=14e4add7079b424c00ea6189dcd5066d; length=157; release=r6.09; species=Dmel; [dmel-all-translation-r6.09.fasta]
  • [fly-122215-dmel-6-09-contam.fasta]
  • type=protein; loc=3R:complement(30745787..30746260); ID=FBpp0085084; name=Npc2h-PA; parent=FBgn0039801,FBtr0085722; dbxref=FlyBase:FBpp0085084,FlyBase_Annotation_IDs:CG11315-PA,GB_protein:AAF57082.1,REFSEQ:NP_651824,GB_protein:AAF57082,UniProt/TrEMBL:Q9VA41,FlyMine:FBpp0085084,modMine:FBpp0085084; MD5=14e4add7079b424c00ea6189dcd5066d; length=157; release=r6.14; species=Dmel; [fly-dmel-jan2017-sandracontam.fasta]
  • type=protein; loc=3R:complement(30745787..30746260); ID=FBpp0297401; name=Npc2h-PC; parent=FBgn0039801,FBtr0306292; dbxref=REFSEQ:NP_001247376,GB_protein:AFH06693,FlyBase:FBpp0297401,FlyBase_Annotation_IDs:CG11315-PC,UniProt/TrEMBL:Q9VA41; MD5=14e4add7079b424c00ea6189dcd5066d; length=157; release=r6.14; species=Dmel; [fly-dmel-jan2017-sandracontam.fasta]
    • Organism: Drosophila melanogaster
    Length: 157 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLRLSSLLPV AFALVLSSVS AEIVNFQTCE DSVDSCSISQ VRVTPCPEAN ANAACHIRRR  60
   61 HRFTMSFDFT PHFDADTLVA SLGWAKSENV ELPLLTMDQE ACKYTTCPVR SGVTQTYTNN 120
  121 MPADARFPLS PYTIRWALKD PVSQKRCCFT IDIKVVR

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..157] PSI-BLAST 38.69897 Epididymal secretory protein E1 (Niemann-Pick C2 protein)

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  0.879052093832773 bayes_pls_golite062009
  • protein binding
    		•  0.80731472263402 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle