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Protein Overview: Rb97D-PI, Rb97D-...

General Information:
Name(s) found: Rb97D-PI / FBpp0099745 [FlyBase]
Rb97D-PH / FBpp0099744 [FlyBase]
Rb97D-PF / FBpp0099742 [FlyBase]
Rb97D-PB / FBpp0084463 [FlyBase]
Description(s) found:
Found 62 descriptions.
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  • The gene Ribonuclear protein at 97D is referred to in FlyBase by the symbol Dmel\Rb97D (CG6354, FBgn0004903). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is 3R:22698303..22701464. It has the cytological map location 97D3. Based on sequence similarity, it is predicted to have molecular function</span>: mRNA binding. There is experimental evidence that it is involved in the biological process</span>: spermatid development. 9 alleles are reported. The phenotype of these alleles is annotated with: axoneme. It has 9 annotated transcripts and 9 annotated polypeptides. [FlyBase]
  • The gene Ribonuclear protein at 97D is referred to in FlyBase by the symbol Dmel\Rb97D (CG6354, FBgn0004903). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is 3R:22698303..22701464. It has the cytological map location 97D3. Based on sequence similarity, it is predicted to have molecular function</span>: mRNA binding. There is experimental evidence that it is involved in the biological process</span>: spermatid development. 9 alleles are reported. The phenotype of these alleles is annotated with: axoneme. It has 9 annotated transcripts and 9 annotated polypeptides. [FlyBase]
  • The gene Ribonuclear protein at 97D is referred to in FlyBase by the symbol Dmel\Rb97D (CG6354, FBgn0004903). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is 3R:22698303..22701464. It has the cytological map location 97D3. Based on sequence similarity, it is predicted to have molecular function</span>: mRNA binding. There is experimental evidence that it is involved in the biological process</span>: spermatid development. 9 alleles are reported. The phenotype of these alleles is annotated with: axoneme. It has 9 annotated transcripts and 9 annotated polypeptides. [FlyBase]
  • The gene Ribonuclear protein at 97D is referred to in FlyBase by the symbol Dmel\Rb97D (CG6354, FBgn0004903). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is 3R:22698303..22701464. It has the cytological map location 97D3. Based on sequence similarity, it is predicted to have molecular function</span>: mRNA binding. There is experimental evidence that it is involved in the biological process</span>: spermatid development. 9 alleles are reported. The phenotype of these alleles is annotated with: axoneme. It has 9 annotated transcripts and 9 annotated polypeptides. [FlyBase]
    • Organism: Drosophila melanogaster
    Length: 471 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: spermatid development [IMP]
    spermatogenesis [NAS]
    Molecular Function: nucleotide binding [IEA]
    nucleic acid binding [IEA]
    mRNA binding [ISS][NAS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVKDEPLSDE SADVIVLADR EEDDICELEH LRKLFIGGLA PYTTEENLKL FYGQWGKVVD  60
   61 VVVMRDAATK RSRGFGFITY TKSLMVDRAQ ENRPHIIDGK TVEAKRALPR PERESRETNI 120
  121 SVKKLFVGGL KDNHDEECLR EYFLQFGNVV SVKLLTDKTT GKRRGFAFVE FDDYDAVDKA 180
  181 ILKKQHAIKY VHVDVKKSIY NLDKKEKQQP GGLANAIKPS LNQQQQQQGG GQQPPNGNMQ 240
  241 APSFRPPVPP QQAMGPYQQQ PPPAPMSAPP PNFNYWGPPP PAMPPYYQQP PPQQMNGWGP 300
  301 YPPPQQNGWN APPPPPPGAQ QWHANQWGCP PPVQQVPPVG AVPPPMGHNG PPPTAPGNWN 360
  361 MPPPVPGAAP PSHQQQSSQQ PTPQPNFGTG YQQNYGGGPS KHNNMNANRM NPYSAGPPNS 420
  421 YHTPQPPAYT GYNAGPLPPN GSVPPPTGAK AVGVSNGSVA TGGSANSKYR R

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..209] PSI-BLAST 61.69897 Crystal Structure of UP1 Complexed With d(TTAGGGTTAG(6-MI)G); A Human Telomeric Repeat Containing 6-methyl-8-(2-deoxy-beta-ribofuranosyl)isoxanthopteridine (6-MI)
    2 View Details [210..327] FFAS03 1.17 No description for 2j63A was found.
    3 View Details [328..471] PSI-BLAST 6.522879 Sec24

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  1.86761524461453 bayes_pls_golite062009
  • mRNA binding
    		•  0.82173997395155 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.727288287394927 bayes_pls_golite062009
  • protein binding
    		•  0.426607329742248 bayes_pls_golite062009
  • RNA binding
    		•  0.299180957062386 bayes_pls_golite062009
    2 No functions predicted.
    3 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle