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Protein Overview: FBpp0303780, FBp...

General Information:
Name(s) found: FBpp0303780 [FlyBase]
FBpp0303779 [FlyBase]
FBpp0303778 [FlyBase]
RpL27-PA / FBpp0084306 [FlyBase]
Description(s) found:
Found 40 descriptions.
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  • type=protein; loc=3R:complement(21509817..21510224); ID=FBpp0303780; name=RpL27-PD; parent=FBgn0039359,FBtr0331362; dbxref=FlyBase:FBpp0303780,FlyBase_Annotation_IDs:CG4759-PD,REFSEQ:NP_001262968,GB_protein:AGB96348; MD5=eaa1d2f62e656422362032085ffd53da; length=135; release=r5.56; species=Dmel; [FlyBase]
  • type=protein; loc=3R:complement(21509817..21510224); ID=FBpp0303779; name=RpL27-PC; parent=FBgn0039359,FBtr0331361; dbxref=FlyBase:FBpp0303779,FlyBase_Annotation_IDs:CG4759-PC,REFSEQ:NP_001262967,GB_protein:AGB96347; MD5=eaa1d2f62e656422362032085ffd53da; length=135; release=r5.56; species=Dmel; [FlyBase]
  • type=protein; loc=3R:complement(21509817..21510224); ID=FBpp0303778; name=RpL27-PB; parent=FBgn0039359,FBtr0331360; dbxref=FlyBase:FBpp0303778,FlyBase_Annotation_IDs:CG4759-PB,REFSEQ:NP_001262966,GB_protein:AGB96346; MD5=eaa1d2f62e656422362032085ffd53da; length=135; release=r5.56; species=Dmel; [FlyBase]
  • The gene Ribosomal protein L27 is referred to in FlyBase by the symbol Dmel\RpL27 (CG4759, FBgn0039359). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is 3R:21509460..21510813. It has the cytological map location 96E9-96E10. Based on sequence similarity, it is predicted to have molecular function</span>: structural constituent of ribosome. There is experimental evidence that it is involved in the biological process</span>: mitotic spindle elongation; mitotic spindle organization. 2 alleles are reported. No phenotypic data is available. It has one annotated transcript and one annotated polypeptide. [FlyBase]
    • Organism: Drosophila melanogaster
    Length: 135 amino acids

    Gene Ontology:
    Cellular Component: cytosolic large ribosomal subunit [ISS]
    Biological Process: mitotic spindle elongation [IMP]
    mitotic spindle organization [IMP]
    translation [ISS]
    Molecular Function: structural constituent of ribosome [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRKIMKQGKI VIVLSGRYAG RKAIIVKTHD DGTPEKPFGH ALVAGIDRYP RKVTKKMGKN  60
   61 KLKKKSKVKP FLKSLNYNHL MPTRYTAHDI SFEKLSPKDL KDPVKRKTHR FQTRVKFESV 120
  121 YKEGKNKWFF QKLRF

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..135] FFAS03 3.06 No description for 2joyA was found.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • structural constituent of ribosome
    		•  9.33175622373475 bayes_pls_golite062009
  • structural molecule activity
    		•  8.78104488316498 bayes_pls_golite062009
  • translation elongation factor activity
    		•  2.67300686401704 bayes_pls_golite062009
  • binding
    		•  1.53082494948413 bayes_pls_golite062009
  • RNA binding
    		•  1.34286989242843 bayes_pls_golite062009
  • nucleic acid binding
    		•  1.34250569976274 bayes_pls_golite062009
  • transcription regulator activity
    		•  1.24801565562229 bayes_pls_golite062009
  • DNA binding
    		•  0.817602006068725 bayes_pls_golite062009
  • protein binding
    		•  0.247509245072821 bayes_pls_golite062009
  • transcription factor activity
    		•  0.151888933180377 bayes_pls_golite062009
  • translation regulator activity
    		•  0.084754562593104 bayes_pls_golite062009
  • translation factor activity, nucleic acid binding
    		•  0.0564075582229911 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.93

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle