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Protein Overview: Vps33B-PA

General Information:
Name(s) found: Vps33B-PA / FBpp0084210 [FlyBase]
Description(s) found:
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  • gi|7301340|gb|AAF56468.1| CG5127 [Drosophila melanogaster] [NCBI NR]
  • gi|24650070|ref|NP_651395.1| CG5127 [Drosophila melanogaster] [NCBI NR]
  • The gene Vacuolar protein sorting 33B is referred to in FlyBase by the symbol Dmel\Vps33B (CG5127, FBgn0039335). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is 3R:21299238..21301479. It has the cytological map location 96E1. Its molecular function is unknown. Based on sequence similarity, it is predicted to be involved in the biological process</span>: vesicle-mediated transport. 2 alleles are reported. No phenotypic data is available. It has one annotated transcript and one annotated polypeptide. [FlyBase]
  • >CG5127-PA translation from_gene[CG5127 CG5127 FBgn0039335] seq_release:3 mol_weight=71215 cds_boundaries:(3R:21,288,603..21,290,698[+]) aa_length:640 transcript_info:[CG5127-RA seq_release:3] gene_info:[gene symbol:CG5127 FBgn0039335 gene_boundaries:( [hmr_yeast5_DM3-1_pombe.fasta]
  • (Q9VBR1) CG5127 protein [DrosMelano7227.FASTAC.txt]
  • (AE003752) CG5127 gene product [Drosophila melanogaster] [yeastflysequest.fasta]
  • CG5127-PA [Drosophila melanogaster]gi|24650070|ref|NP_651395.1| CG5127-PA [Drosophila melanogaster] [nrdb_11152004_Chlamydomonas]
  • type=protein; loc=3R:join(21299238..21299294,21299350..21299450,21299508..21299826,21299891..21301336); ID=FBpp0084210; name=CG5127-PA; parent=FBgn0039335,FBtr0084835; dbxref=FlyBase:FBpp0084210,FlyBase_Annotation_IDs:CG5127-PA,GB_protein:AAF56468.1,REFSE [fly-100309-contam.fasta]
  • CG5127-PA [Drosophila melanogaster] [nr-271106-contam.fasta]
  • type=protein; loc=3R:join(21299238..21299294,21299350..21299450,21299508..21299826,21299891..21301336); ID=FBpp0084210; name=CG5127-PA; parent=FBgn0039335,FBtr0084835; dbxref=FlyBase:FBpp0084210,FlyBase_Annotation_IDs:CG5127-PA,GB_protein:AAF56468.1,REFSEQ:NP_651395,GB_protein:AAF56468; MD5=fe70dbe2b604672a132680cd05c577dd; length=640; release=r5.16; species=Dmel; [fly-contam-His-TEV-Tub4complex.fasta]
  • type=protein; loc=3R:join(21299238..21299294,21299350..21299450,21299508..21299826,21299891..21301336); ID=FBpp0084210; name=Vps33B-PA; parent=FBgn0039335,FBtr0084835; dbxref=FlyBase:FBpp0084210,FlyBase_Annotation_IDs:CG5127-PA,GB_protein:AAF56468.1,REFSEQ:NP_651395,GB_protein:AAF56468; MD5=fe70dbe2b604672a132680cd05c577dd; length=640; release=r5.21; species=Dmel; [Other_drosophila_na_09-09-2009_reversed.fasta]
  • Vacuolar protein sorting 33B OS=Drosophila melanogaster GN=Vps33B PE=1 SV=1 [UniProt_drosophila_07-01-2011_reversed.fasta]
  • type=protein; loc=3R:join(21299238..21299294,21299350..21299450,21299508..21299826,21299891..21301336); ID=FBpp0084210; name=Vps33B-PA; parent=FBgn0039335,FBtr0084835; dbxref=FlyBase:FBpp0084210,FlyBase_Annotation_IDs:CG5127-PA,GB_protein:AAF56468.1,REFSEQ:NP_651395,GB_protein:AAF56468,FlyMine:FBpp0084210,modMine:FBpp0084210; MD5=fe70dbe2b604672a132680cd05c577dd; length=640; release=r5.46; species=Dmel; [fly-062812-sfps-sandra-contam.fasta]
  • Vacuolar protein sorting 33B OS=Drosophila melanogaster GN=Vps33B PE=2 SV=1 [UniProt_D_Melanogaster_07132012_07-13-2012_reversed.fasta]
  • type=protein; loc=3R:join(25473516..25473572,25473628..25473728,25473786..25474104,25474169..25475614); ID=FBpp0084210; name=Vps33B-PA; parent=FBgn0039335,FBtr0084835; dbxref=FlyBase:FBpp0084210,FlyBase_Annotation_IDs:CG5127-PA,GB_protein:AAF56468.1,REFSEQ:NP_651395,GB_protein:AAF56468,FlyMine:FBpp0084210,modMine:FBpp0084210; MD5=fe70dbe2b604672a132680cd05c577dd; length=640; release=r6.02; species=Dmel; [fly-2014-05-contam.fasta]
  • type=protein; loc=3R:join(25473516..25473572,25473628..25473728,25473786..25474104,25474169..25475614); ID=FBpp0084210; name=Vps33B-PA; parent=FBgn0039335,FBtr0084835; dbxref=FlyBase:FBpp0084210,FlyBase_Annotation_IDs:CG5127-PA,GB_protein:AAF56468.1,REFSEQ:NP_651395,GB_protein:AAF56468,FlyMine:FBpp0084210,modMine:FBpp0084210; MD5=fe70dbe2b604672a132680cd05c577dd; length=640; release=r6.07; species=Dmel; [fly-08202015-contam.fasta]
  • FBpp0084210 type=protein; loc=3R:join(25473516..25473572,25473628..25473728,25473786..25474104,25474169..25475614); ID=FBpp0084210; name=Vps33B-PA; parent=FBgn0039335,FBtr0084835; dbxref=FlyBase:FBpp0084210,FlyBase_Annotation_IDs:CG5127-PA,GB_protein:AAF56468.1,REFSEQ:NP_651395,GB_protein:AAF56468,FlyMine:FBpp0084210,modMine:FBpp0084210; MD5=fe70dbe2b604672a132680cd05c577dd; length=640; release=r6.09; species=Dmel; [dmel-all-translation-r6.09.fasta]
  • [fly-122215-dmel-6-09-contam.fasta]
  • type=protein; loc=3R:join(25473516..25473572,25473628..25473728,25473786..25474104,25474169..25475614); ID=FBpp0084210; name=Vps33B-PA; parent=FBgn0039335,FBtr0084835; dbxref=FlyBase:FBpp0084210,FlyBase_Annotation_IDs:CG5127-PA,GB_protein:AAF56468.1,REFSEQ:NP_651395,GB_protein:AAF56468,UniProt/TrEMBL:Q9VBR1,FlyMine:FBpp0084210,modMine:FBpp0084210; MD5=fe70dbe2b604672a132680cd05c577dd; length=640; release=r6.14; species=Dmel; [fly-dmel-jan2017-sandracontam.fasta]
    • Organism: Drosophila melanogaster
    Length: 640 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: vesicle-mediated transport [ISS]
    vesicle docking during exocytosis [IEA]
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDLTLDKKLQ GFQLVAQEKL CSILCSIPGK KELILEPDLI KPLEHVVTAS WLKLKGIQRI  60
   61 YKHDAAQSLP RSADQVHIYM IRSVLGTFQT LLKQLQPVAS EEMPDISMKM YHIVCVPSCY 120
  121 SYFQTLLEQA GLYGLVQLHH FNWDFIYFDQ GVLSLELPNL YECLYLQKNT SPLPAVAQSL 180
  181 RLLQMICGQP SLILSFGHHS SQLMQMAKTL GKLPAPTNPP DYGGWLVIDR DKDYPASLLT 240
  241 PAIYAGLLLE VFEHSSGEIL VDNSKNKIRS QRVELLQGKK SKIGVNSASK PCSIRLNSTS 300
  301 DEIYGDNRYK RFAQVSSLIH AQVKALGLEL QKLNDMQLDE MHDYVARKLP KLTELKSKVL 360
  361 RHLNASEIVI QMMGNFRKLQ TLEEDILNND SRKRLLSEID ELLTTDGQRF NTLRLLCLLH 420
  421 HCVGVAPEEL QIFARNYCNL FGHQELGVFQ QLSQAGLLPP LVVEKKAPTK LLSNLPLPKF 480
  481 QQTEFQANAN RLKLLTSSGD GQDGGSSSKS QSSGLQTCPS FVFNGTYIPL VAQLCSILLK 540
  541 INSAEELSSK LGMIEGLHLH LDSGKITPKA YASQVKLNGV ADQDMFPLRL RNLFVFIVGG 600
  601 ASYAEIAACD FVAKLTGAQI TVASDSLMAG SDLIATAFNR

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..640] PSI-BLAST 117.0 Neuronal Sec1, NSec1

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • SNARE binding
    		•  3.42828022195984 bayes_pls_golite062009
  • binding
    		•  2.7837022903231 bayes_pls_golite062009
  • syntaxin binding
    		•  2.11416428645287 bayes_pls_golite062009
  • protein binding
    		•  1.7224010512877 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.80

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle