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Protein Overview: CG13623-PA, FBpp...

General Information:
Name(s) found: FBpp0306445 [FlyBase]
CG13623-PA / FBpp0084059 [FlyBase]
Description(s) found:
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  • gi|24649697|ref|NP_651267.1| CG13623 [Drosophila melanogaster] [NCBI NR]
  • gi|21430012|gb|AAM50684.1| GH27470p [Drosophila melanogaster] [NCBI NR]
  • gi|10726751|gb|AAF56310.2| CG13623 [Drosophila melanogaster] [NCBI NR]
  • type=protein; loc=3R:complement(20355543..20355918,20355980..20356023); ID=FBpp0306445; name=CG13623-PB; parent=FBgn0039205,FBtr0334337; dbxref=FlyBase:FBpp0306445,FlyBase_Annotation_IDs:CG13623-PB,REFSEQ:NP_001262920,GB_protein:AGB96300; MD5=da4c83cd0215eef4f51f28cdf7ae77be; length=139; release=r5.56; species=Dmel; [FlyBase]
  • This gene is referred to in FlyBase by the symbol Dmel\CG13623 (CG13623, FBgn0039205). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is 3R:20355495..20356280. It has the cytological map location 96A6. An electronic pipeline based on InterPro domains suggests that it has the molecular function</span>: structural molecule activity; iron-sulfur cluster binding. An electronic pipeline based on InterPro domains suggests that it is involved in the biological process</span>: iron-sulfur cluster assembly. 2 alleles are reported. No phenotypic data is available. It has one annotated transcript and one annotated polypeptide. [FlyBase]
  • >CG13623-PA translation from_gene[CG13623 CG13623 FBgn0039205] seq_release:3 mol_weight=15247 cds_boundaries:(3R:20,346,203..20,346,680[-]) aa_length:139 transcript_info:[CG13623-RA seq_release:3] gene_info:[gene symbol:CG13623 FBgn0039205 gene_boundar [hmr_yeast5_DM3-1_pombe.fasta]
  • (Q9VC65) CG13623 protein (GH27470p) [DrosMelano7227.FASTAC.txt]
  • (AE003748) CG13623 gene product [Drosophila melanogaster] [yeastflysequest.fasta]
  • CG13623-PA [Drosophila melanogaster]gi|21430012|gb|AAM50684.1| GH27470p [Drosophila melanogaster]gi|24649697|ref|NP_651267.1| CG13623-PA [Drosophila melanogaster] [nrdb_11152004_Chlamydomonas]
  • type=protein; loc=3R:complement(20355543..20355918,20355980..20356023); ID=FBpp0084059; name=CG13623-PA; parent=FBgn0039205,FBtr0084679; dbxref=FlyBase:FBpp0084059,FlyBase_Annotation_IDs:CG13623-PA,GB_protein:AAF56310.2,REFSEQ:NP_651267,GB_protein:AAF5631 [fly-100309-contam.fasta]
  • GH27470p [Drosophila melanogaster] [nr-271106-contam.fasta]
  • CG13623-PA [Drosophila melanogaster] [nr-271106-contam.fasta]
  • type=protein; loc=3R:complement(20355543..20355918,20355980..20356023); ID=FBpp0084059; name=CG13623-PA; parent=FBgn0039205,FBtr0084679; dbxref=FlyBase:FBpp0084059,FlyBase_Annotation_IDs:CG13623-PA,GB_protein:AAF56310.2,REFSEQ:NP_651267,GB_protein:AAF56310; MD5=da4c83cd0215eef4f51f28cdf7ae77be; length=139; release=r5.16; species=Dmel; [fly-contam-His-TEV-Tub4complex.fasta]
  • type=protein; loc=3R:complement(20355543..20355918,20355980..20356023); ID=FBpp0084059; name=CG13623-PA; parent=FBgn0039205,FBtr0084679; dbxref=FlyBase:FBpp0084059,FlyBase_Annotation_IDs:CG13623-PA,GB_protein:AAF56310.2,REFSEQ:NP_651267,GB_protein:AAF56310; MD5=da4c83cd0215eef4f51f28cdf7ae77be; length=139; release=r5.21; species=Dmel; [Other_drosophila_na_09-09-2009_reversed.fasta]
  • CG13623 OS=Drosophila melanogaster GN=CG13623 PE=2 SV=2 [UniProt_drosophila_07-01-2011_reversed.fasta]
  • type=protein; loc=3R:complement(20355543..20355918,20355980..20356023); ID=FBpp0084059; name=CG13623-PA; parent=FBgn0039205,FBtr0084679; dbxref=FlyBase:FBpp0084059,FlyBase_Annotation_IDs:CG13623-PA,GB_protein:AAF56310.2,REFSEQ:NP_651267,GB_protein:AAF56310,FlyMine:FBpp0084059,modMine:FBpp0084059; MD5=da4c83cd0215eef4f51f28cdf7ae77be; length=139; release=r5.46; species=Dmel; [fly-062812-sfps-sandra-contam.fasta]
  • type=protein; loc=3R:complement(join(24530258..24530301,24529821..24530196)); ID=FBpp0084059; name=CG13623-PA; parent=FBgn0039205,FBtr0084679; dbxref=FlyBase:FBpp0084059,FlyBase_Annotation_IDs:CG13623-PA,GB_protein:AAF56310.2,REFSEQ:NP_651267,GB_protein:AAF56310,FlyMine:FBpp0084059,modMine:FBpp0084059; MD5=da4c83cd0215eef4f51f28cdf7ae77be; length=139; release=r6.02; species=Dmel; [fly-2014-05-contam.fasta]
  • type=protein; loc=3R:complement(join(24530258..24530301,24529821..24530196)); ID=FBpp0306445; name=CG13623-PB; parent=FBgn0039205,FBtr0334337; dbxref=FlyBase:FBpp0306445,FlyBase_Annotation_IDs:CG13623-PB,REFSEQ:NP_001262920,GB_protein:AGB96300; MD5=da4c83cd0215eef4f51f28cdf7ae77be; length=139; release=r6.02; species=Dmel; [fly-2014-05-contam.fasta]
  • type=protein; loc=3R:complement(join(24530258..24530301,24529821..24530196)); ID=FBpp0084059; name=CG13623-PA; parent=FBgn0039205,FBtr0084679; dbxref=FlyBase:FBpp0084059,FlyBase_Annotation_IDs:CG13623-PA,GB_protein:AAF56310.2,REFSEQ:NP_651267,GB_protein:AAF56310,FlyMine:FBpp0084059,modMine:FBpp0084059; MD5=da4c83cd0215eef4f51f28cdf7ae77be; length=139; release=r6.07; species=Dmel; [fly-08202015-contam.fasta]
  • type=protein; loc=3R:complement(join(24530258..24530301,24529821..24530196)); ID=FBpp0306445; name=CG13623-PB; parent=FBgn0039205,FBtr0334337; dbxref=FlyBase:FBpp0306445,FlyBase_Annotation_IDs:CG13623-PB,REFSEQ:NP_001262920,GB_protein:AGB96300; MD5=da4c83cd0215eef4f51f28cdf7ae77be; length=139; release=r6.07; species=Dmel; [fly-08202015-contam.fasta]
  • CG13623, isoform A OS=Drosophila melanogaster GN=CG13623 PE=1 SV=2 [DROME.fasta.20160308]
  • FBpp0084059 type=protein; loc=3R:complement(join(24530258..24530301,24529821..24530196)); ID=FBpp0084059; name=CG13623-PA; parent=FBgn0039205,FBtr0084679; dbxref=FlyBase:FBpp0084059,FlyBase_Annotation_IDs:CG13623-PA,GB_protein:AAF56310.2,REFSEQ:NP_651267,GB_protein:AAF56310,FlyMine:FBpp0084059,modMine:FBpp0084059; MD5=da4c83cd0215eef4f51f28cdf7ae77be; length=139; release=r6.09; species=Dmel; [dmel-all-translation-r6.09.fasta]
  • FBpp0306445 type=protein; loc=3R:complement(join(24530258..24530301,24529821..24530196)); ID=FBpp0306445; name=CG13623-PB; parent=FBgn0039205,FBtr0334337; dbxref=FlyBase:FBpp0306445,FlyBase_Annotation_IDs:CG13623-PB,REFSEQ:NP_001262920,GB_protein:AGB96300; MD5=da4c83cd0215eef4f51f28cdf7ae77be; length=139; release=r6.09; species=Dmel; [dmel-all-translation-r6.09.fasta]
  • [fly-122215-dmel-6-09-contam.fasta]
  • type=protein; loc=3R:complement(join(24530258..24530301,24529821..24530196)); ID=FBpp0084059; name=CG13623-PA; parent=FBgn0039205,FBtr0084679; dbxref=FlyBase:FBpp0084059,FlyBase_Annotation_IDs:CG13623-PA,GB_protein:AAF56310.2,REFSEQ:NP_651267,GB_protein:AAF56310,UniProt/TrEMBL:Q9VC65,FlyMine:FBpp0084059,modMine:FBpp0084059; MD5=da4c83cd0215eef4f51f28cdf7ae77be; length=139; release=r6.14; species=Dmel; [fly-dmel-jan2017-sandracontam.fasta]
  • type=protein; loc=3R:complement(join(24530258..24530301,24529821..24530196)); ID=FBpp0306445; name=CG13623-PB; parent=FBgn0039205,FBtr0334337; dbxref=FlyBase:FBpp0306445,FlyBase_Annotation_IDs:CG13623-PB,REFSEQ:NP_001262920,GB_protein:AGB96300,UniProt/TrEMBL:Q9VC65; MD5=da4c83cd0215eef4f51f28cdf7ae77be; length=139; release=r6.14; species=Dmel; [fly-dmel-jan2017-sandracontam.fasta]
    • Organism: Drosophila melanogaster
    Length: 139 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: iron-sulfur cluster assembly [IEA]
    Molecular Function: structural molecule activity [IEA]
    iron-sulfur cluster binding [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAFLLRQVAR SGLQRNLILM RHATASTSAN PELSVQVSES CLKRLREICV DGSFLRVTVE  60
   61 GGGCSGFQYK FDLDKQLNED DRQFGEAEAK VVIDTVSLEY CSGATVDYHS ELIRAGFRMV 120
  121 ANPLAEQGCS CGSSFSIKL

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..139] PSI-BLAST 37.69897 No description for 2apnA was found.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.82

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle