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Protein Overview: CG5524-PA

General Information:
Name(s) found: CG5524-PA / FBpp0083958 [FlyBase]
Description(s) found:
Found 22 descriptions.
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  • This gene is referred to in FlyBase by the symbol Dmel\CG5524 (CG5524, FBgn0039164). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is 3R:20014770..20019145. It has the cytological map location 95E8-95F1. An electronic pipeline based on InterPro domains suggests that it has the molecular function</span>: ATP binding. Based on sequence similarity, it is predicted to be involved in the biological process</span>: DNA repair. 2 alleles are reported. No phenotypic data is available. It has one annotated transcript and one annotated polypeptide. [FlyBase]
    • Organism: Drosophila melanogaster
    Length: 1122 amino acids

    Gene Ontology:
    Cellular Component: chromosome [IEA]
    Biological Process: DNA repair [ISS]
    Molecular Function: ATP binding [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MERSRRGRIR RMPSPGSESD GSTAEPTRKR SKQQFVAEAE PDFVEEETEK YANASTSQTA  60
   61 RSRNKQARQT TLNMSQRSVN FNLTSELSIP NAFDRCGKVI SMRLTNFMCH SNLFIEFGPN 120
  121 INFLVGNNGS GKSAVITALA LGLTSSARAT NRASSIQKLI KNGEVSATIS ITLSNSGLRP 180
  181 FKADIFGPHL TVVRQIRHSS STYDLQDARG KSVSKKVSDI RRMLLCFGIN VENPIFVLNQ 240
  241 EAAREFLKEL EPASNYKLLM KATQLDVCTS SLTECHALRR HFTQELEQLE KKKEMMIKHI 300
  301 AAEEEKLSIL EDKEMVKENL QQCKTKLAWM AVTSYQNELN NLEHSIKLIE NKKASLEQTT 360
  361 SKKESTQATM NQKLKEFEAS KNQILATQKF QDERLKTAKK AVQDLLLEAS QVKAKIGNAE 420
  421 RRMREDQRSY DECEKLIGNY HADFNRVNEQ REENANKIEM LKKQVVKSEE IIAQLRAEQQ 480
  481 EIKRDITSVQ ERLDAVKNGR IQLHKSKQNI SWEIEALSRN KSNKLSVYGE QTIQVVHALR 540
  541 TQYAGSNMHR MPRGPLGQYI SAPNPKYRDL IENQLMHCLR SFIVGSDRER QSLRALLQNK 600
  601 FQGGNMPTII TSPFTDRVYD VSRNKVQPTT PNTTVLIDEI SCDDPVVMNY LIDILRIETV 660
  661 LVTESKEIAE FLTSDTENVP PNLTRVLVPN LGLEYIPSPN YAVYSTRITP ARYIQKNVDD 720
  721 RIRQLQMEQS DLQEKEPSLE IDYMQHKKVL ENTQKVISQK STMIGQHQSR NQKAMQKIME 780
  781 LQNFDYQELP EYDRLKSHLA DSGEKIEKCR LEREMLQEKL LSIQHRQTEL ESTEAEERRA 840
  841 LEGINKKLTA LDTEAGEVES KMRSLDLHYE ENTRRFQKTL QLERKMLGEK ETVLSELEKA 900
  901 RTEAEKLGEF IATTQTEEKI REAISRYKSK IKQVEELNYN PEELERGLAE LRDELELQSR 960
  961 HLAVVDSVVK KLRMAYHQRA QLFQRSRHHY FTMVQFQFEQ ALAMRQFKVS FETSDKEKTW1020
 1021 KINVFPPSGN ETSNTRSLSG GERSFTTVSL LKGLWSTSDH PFYFLDEYDV FTDEVNRKFI1080
 1081 TEILIGEGLE WLSRQYCFLT PQDTKVEASN LITVHKLEAP ER

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..96] deduced N/A No confident structure predictions are available.
    2 View Details [97..175] PSI-BLAST 17.154902 Sc Smc1hd:Scc1-C complex, ATPgS
    3 View Details [176..249] PSI-BLAST 6.0 Tropomyosin
    4 View Details [250..604] PSI-BLAST 16.0 Heavy meromyosin subfragment
    5 View Details [605..677] deduced N/A No confident structure predictions are available.
    6 View Details [678..968] FFAS03 3.31 Tropomyosin
    7 View Details [969..1122] PSI-BLAST 18.154902 Structural biochemistry of ATP-driven dimerization and DNA stimulated activation of SMC ATPases.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.97

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle