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Protein Overview: FBpp0311970, pin...

General Information:
Name(s) found: FBpp0311970 [FlyBase]
pinta-PA / FBpp0083690 [FlyBase]
Description(s) found:
Found 26 descriptions.
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  • type=protein; loc=3R:complement(18249318..18249516,18249574..18249803,18250020..18250412); ID=FBpp0311970; name=pinta-PB; parent=FBgn0038966,FBtr0346142; dbxref=FlyBase:FBpp0311970,FlyBase_Annotation_IDs:CG13848-PB; MD5=89cd6f6774c9abdbcd98a71d28fee14a; length=273; release=r5.56; species=Dmel; [FlyBase]
  • The gene prolonged depolarization afterpotential (PDA) is not apparent is referred to in FlyBase by the symbol Dmel\pinta (CG13848, FBgn0038966). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is 3R:18249027..18250447. It has the cytological map location 94A12-94A13. There is experimental evidence that it has the molecular function</span>: retinoid binding. There is experimental evidence that it is involved in the biological process</span>: phototransduction; rhodopsin biosynthetic process. 3 alleles are reported. No phenotypic data is available. It has one annotated transcript and one annotated polypeptide. [FlyBase]
    • Organism: Drosophila melanogaster
    Length: 273 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: rhodopsin biosynthetic process [IMP]
    phototransduction [IMP]
    Molecular Function: vitamin E binding [ISS]
    retinoid binding [IDA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MWSRSSSSKR QVATTDGDPE RVLAQVQDLS DWLVANPQIN GCNTFENLHF FLRTSKFDVE  60
   61 RAKKKLKTFY QMRAERTEWF DNRDPQLPEI QDLLKLGVFL PIGPDAEQRM VVVIRTAAHD 120
  121 PKLHSQNNVF KTSKMILDLL LKLDPETCAR GMVAILDMQG VQLGHALQMN PKLIKRSVES 180
  181 WTAYPCQPKL LEFTNAPRHV NFFLNTFRIF MTPKIRSRLF VRREGTSVSC DQLPKELGGQ 240
  241 GLSYMELSVK WKQLVEENAD FYVEQDKYKS KLK

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..273] PSI-BLAST 49.522879 The Molecular Basis of Vitamin E Retention: Structure of Human Alpha-Tocopherol Transfer Protein

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • vitamin E binding
    		•  3.4750898323716 bayes_pls_golite062009
  • binding
    		•  0.574651955133353 bayes_pls_golite062009
  • vitamin binding
    		•  0.27562420820907 bayes_pls_golite062009
  • retinal binding
    		•  0.23509753179789 bayes_pls_golite062009
  • phosphatidylinositol transporter activity
    		•  1.85158204979441E-4 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle