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Protein Overview: FBpp0306056, Snmp-PA

General Information:
Name(s) found: FBpp0306056 [FlyBase]
Snmp-PA / FBpp0083430 [FlyBase]
Description(s) found:
Found 26 descriptions.
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  • type=protein; loc=3R:complement(16991436..16991733,16991794..16991972,16992033..16992539,16992608..16992862,16993308..16993455,16993522..16993679,16993740..16993850); ID=FBpp0306056; name=Snmp1-PB; parent=FBgn0260004,FBtr0333928; dbxref=FlyBase:FBpp0306056,FlyBase_Annotation_IDs:CG7000-PB,REFSEQ:NP_001262803,GB_protein:AGB96183; MD5=13d43a6924fff47f121f5eb0b9d7de2b; length=551; release=r5.56; species=Dmel; [FlyBase]
  • The gene Sensory neuron membrane protein is referred to in FlyBase by the symbol Dmel\Snmp (CG7000, FBgn0260004). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is 3R:16991220..16993927. It has the cytological map location 93C2. Based on sequence similarity, it is predicted to have molecular function</span>: scavenger receptor activity. There is experimental evidence that it is involved in the biological process</span>: response to pheromone; cell surface receptor linked signal transduction. 10 alleles are reported. The phenotype of these alleles is annotated with: olfactory neuron. It has one annotated transcript and one annotated polypeptide. [FlyBase]
    • Organism: Drosophila melanogaster
    Length: 551 amino acids

    Gene Ontology:
    Cellular Component: integral to plasma membrane [NAS]
    dendrite [IDA]
    membrane [IEA]
    neuronal cell body [IDA]
    Biological Process: cell adhesion [IEA]
    response to pheromone [IMP]
    cell surface receptor linked signaling pathway [IMP]
    defense response [NAS]
    Molecular Function: scavenger receptor activity [ISS][NAS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQVPRVKLLM GSGAMFVFAI IYGWVIFPKI LKFMISKQVT LKPGSDVREL WSNTPFPLHF  60
   61 YIYVFNVTNP DEVSEGAKPR LQEVGPFVFD EWKDKYDLED DVVEDTVSFT MRNTFIFNPK 120
  121 ESLPLTGEEE IILPHPIMLP GGISVQREKA AMMELVSKGL SIVFPDAKAF LKAKFMDLFF 180
  181 RGINVDCSSE EFSAKALCTV FYTGEIKQAK QVNQTHFLFS FMGQANHSDS GRFTVCRGVK 240
  241 NNKKLGKVVK FADEPEQDIW PDGECNTFVG TDSTVFAPGL KKEDGLWAFT PDLCRSLGAY 300
  301 YQHKSSYHGM PSMRYTLDLG DIRADEKLHC FCEDPEDLDT CPPKGTMNLA ACVGGPLMAS 360
  361 MPHFYLGDPK LVADVDGLNP NEKDHAVYID FELMSGTPFQ AAKRLQFNLD MEPVEGIEPM 420
  421 KNLPKLILPM FWVEEGVQLN KTYTNLVKYT LFLGLKINSV LRWSLITFSL VGLMFSAYLF 480
  481 YHKSDSLDIN SILKDNNKVD DVASTKEPLP SANPKQSSTV HPVQLPNTLI PGTNPATNPA 540
  541 THHKMEHRER Y

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..124] MSA 4.118979 View MSA. No confident structure predictions are available.
    2 View Details [125..282] MSA 4.131985 View MSA. No confident structure predictions are available.
    3 View Details [283..366] MSA 2.132976 View MSA. No confident structure predictions are available.
    4 View Details [367..551] MSA 7.126993 View MSA. No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
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