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Protein Overview: Synd-PB

General Information:
Name(s) found: Synd-PB / FBpp0083373 [FlyBase]
Description(s) found:
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  • gi|28571785|ref|NP_788697.1| syndapin [Drosophila melanogaster] [NCBI NR]
  • gi|23171820|gb|AAF55812.2| syndapin [Drosophila melanogaster] [NCBI NR]
  • gi|17862716|gb|AAL39835.1| LD46328p [Drosophila melanogaster] [NCBI NR]
  • The gene Syndapin is referred to in FlyBase by the symbol Dmel\Synd (CG33094, FBgn0053094). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is 3R:16658507..16665840. It has the cytological map location 93A1-93A2. Its molecular function is unknown. It is reported to be involved in the biological process</span>: neurotransmitter secretion; synaptic vesicle endocytosis. 12 alleles are reported. No phenotypic data is available. It has one annotated transcript and one annotated polypeptide. [FlyBase]
  • >CG33094-PB translation from_gene[CG33094 syndapin FBgn0053094] seq_release:3 mol_weight=55910 cds_boundaries:(3R:16,660,967..16,665,133[+]) aa_length:494 transcript_info:[CG33094-RB seq_release:3] gene_info:[gene symbol:syndapin synonyms:[CG15694] FBg [hmr_yeast5_DM3-1_pombe.fasta]
  • (Q9VDI1) CG15694 protein (LD46328p) [DrosMelano7227.FASTAC.txt]
  • CG33094-PB [Drosophila melanogaster]gi|17862716|gb|AAL39835.1| LD46328p [Drosophila melanogaster]gi|28571785|ref|NP_788697.1| CG33094-PB [Drosophila melanogaster] [nrdb_11152004_Chlamydomonas]
  • type=protein; loc=3R:join(16660950..16661053,16661597..16661706,16663307..16663644,16663757..16663983,16664047..16664167,16664235..16664345,16664401..16664609,16664780..16664937,16665013..16665119); ID=FBpp0083373; name=Synd-PB; parent=FBgn0053094,FBtr008 [fly-100309-contam.fasta]
  • CG33094-PB [Drosophila melanogaster] [nr-271106-contam.fasta]
  • LD46328p [Drosophila melanogaster] [nr-271106-contam.fasta]
  • Syndapin CG33094-PB [Drosophila melanogaster] [nr-271106-contam.fasta]
  • type=protein; loc=3R:join(16660950..16661053,16661597..16661706,16663307..16663644,16663757..16663983,16664047..16664167,16664235..16664345,16664401..16664609,16664780..16664937,16665013..16665119); ID=FBpp0083373; name=Synd-PB; parent=FBgn0053094,FBtr0083966; dbxref=FlyBase:FBpp0083373,FlyBase_Annotation_IDs:CG33094-PB,GB_protein:AAF55812.2,REFSEQ:NP_788697,GB_protein:AAF55812; MD5=d2823e80461354bc9c574a7a44fdafc8; length=494; release=r5.16; species=Dmel; [fly-contam-His-TEV-Tub4complex.fasta]
  • type=protein; loc=3R:join(16660950..16661053,16661597..16661706,16663307..16663644,16663757..16663983,16664047..16664167,16664235..16664345,16664401..16664609,16664780..16664937,16665013..16665119); ID=FBpp0083373; name=Synd-PB; parent=FBgn0053094,FBtr0083966; dbxref=FlyBase:FBpp0083373,FlyBase_Annotation_IDs:CG33094-PB,GB_protein:AAF55812.2,REFSEQ:NP_788697,GB_protein:AAF55812; MD5=d2823e80461354bc9c574a7a44fdafc8; length=494; release=r5.21; species=Dmel; [Other_drosophila_na_09-09-2009_reversed.fasta]
  • LD46328p OS=Drosophila melanogaster GN=Synd PE=1 SV=2 [UniProt_drosophila_07-01-2011_reversed.fasta]
  • type=protein; loc=3R:join(16660950..16661053,16661597..16661706,16663307..16663644,16663757..16663983,16664047..16664167,16664235..16664345,16664401..16664609,16664780..16664937,16665013..16665119); ID=FBpp0083373; name=Synd-PB; parent=FBgn0053094,FBtr0083966; dbxref=FlyBase:FBpp0083373,FlyBase_Annotation_IDs:CG33094-PB,GB_protein:AAF55812.2,REFSEQ:NP_788697,GB_protein:AAF55812,FlyMine:FBpp0083373,modMine:FBpp0083373; MD5=d2823e80461354bc9c574a7a44fdafc8; length=494; release=r5.46; species=Dmel; [fly-062812-sfps-sandra-contam.fasta]
  • type=protein; loc=3R:join(20835228..20835331,20835875..20835984,20837585..20837922,20838035..20838261,20838325..20838445,20838513..20838623,20838679..20838887,20839058..20839215,20839291..20839397); ID=FBpp0083373; name=Synd-PB; parent=FBgn0053094,FBtr0083966; dbxref=FlyBase:FBpp0083373,FlyBase_Annotation_IDs:CG33094-PB,GB_protein:AAF55812.2,REFSEQ:NP_788697,GB_protein:AAF55812,FlyMine:FBpp0083373,modMine:FBpp0083373; MD5=d2823e80461354bc9c574a7a44fdafc8; length=494; release=r6.02; species=Dmel; [fly-2014-05-contam.fasta]
  • type=protein; loc=3R:join(20835228..20835331,20835875..20835984,20837585..20837922,20838035..20838261,20838325..20838445,20838513..20838623,20838679..20838887,20839058..20839215,20839291..20839397); ID=FBpp0083373; name=Synd-PB; parent=FBgn0053094,FBtr0083966; dbxref=FlyBase:FBpp0083373,FlyBase_Annotation_IDs:CG33094-PB,GB_protein:AAF55812.2,REFSEQ:NP_788697,GB_protein:AAF55812,FlyMine:FBpp0083373,modMine:FBpp0083373; MD5=d2823e80461354bc9c574a7a44fdafc8; length=494; release=r6.07; species=Dmel; [fly-08202015-contam.fasta]
  • Isoform of A0A0B4KH28, LD46328p OS=Drosophila melanogaster GN=Synd PE=1 SV=2 [DROME.fasta.20160308]
  • FBpp0083373 type=protein; loc=3R:join(20835228..20835331,20835875..20835984,20837585..20837922,20838035..20838261,20838325..20838445,20838513..20838623,20838679..20838887,20839058..20839215,20839291..20839397); ID=FBpp0083373; name=Synd-PB; parent=FBgn0053094,FBtr0083966; dbxref=FlyBase:FBpp0083373,FlyBase_Annotation_IDs:CG33094-PB,GB_protein:AAF55812.2,REFSEQ:NP_788697,GB_protein:AAF55812,FlyMine:FBpp0083373,modMine:FBpp0083373; MD5=d2823e80461354bc9c574a7a44fdafc8; length=494; release=r6.09; species=Dmel; [dmel-all-translation-r6.09.fasta]
  • [fly-122215-dmel-6-09-contam.fasta]
  • type=protein; loc=3R:join(20835228..20835331,20835875..20835984,20837585..20837922,20838035..20838261,20838325..20838445,20838513..20838623,20838679..20838887,20839058..20839215,20839291..20839397); ID=FBpp0083373; name=Synd-PB; parent=FBgn0053094,FBtr0083966; dbxref=FlyBase:FBpp0083373,FlyBase_Annotation_IDs:CG33094-PB,GB_protein:AAF55812.2,REFSEQ:NP_788697,GB_protein:AAF55812,UniProt/TrEMBL:Q9VDI1,FlyMine:FBpp0083373,modMine:FBpp0083373; MD5=d2823e80461354bc9c574a7a44fdafc8; length=494; release=r6.14; species=Dmel; [fly-dmel-jan2017-sandracontam.fasta]
    • Organism: Drosophila melanogaster
    Length: 494 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: synaptic vesicle endocytosis [NAS]
    neurotransmitter secretion [NAS]
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSHHSDDQLL QAGSDSFWEP GNYKRTTKRI EDGYKLCNDL QQLIQERADI EKGYAKSLRT  60
   61 WSKKWGELIE KGPEYGTTEA AWKGVLTESE RISDVHMKIK DNLCNDVNSQ IKTWQKENYH 120
  121 HTLMQIKERK DLEDLFKKAQ KPWAKLLAKV EKAKADYHSA CKTERSATNQ ERNANADSSL 180
  181 SPDQVKKMHD RVQKTKDQVQ KCREKYEQAI AEITKYNSVY IEDMTSVFEK CQTFEKTRLQ 240
  241 FFKEILFNVH SCLDLTKVQS LPQIYEEFSH TINNADQQKD LKWWSNNHGI NMAMNWPSFV 300
  301 EYTEEFRDIA KGNKSKEALP AAPITLINQR PVAEDVHEYP QTNSLKKNTS TLSSVSSRAS 360
  361 VKSEIATTQS SVTTSEAKTS AAVAGAATAT AAATAASAAS NRNSSVTNGN GKVDANPFDE 420
  421 EEEWDESDNV LVDNGEPGVP VKALYDYEGA ESDELTFKQG DVFEKLEDED EQGWCKGRMN 480
  481 GRVGLYPANY VETA

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..314] PSI-BLAST 26.69897 No description for 2eflA was found.
    2 View Details [315..494] PSI-BLAST 11.154902 53BP2

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  2.22529267810903 bayes_pls_golite062009
  • protein binding
    		•  1.87308005875135 bayes_pls_golite062009
  • cytoskeletal protein binding
    		•  0.476667697682482 bayes_pls_golite062009
  • identical protein binding
    		•  0.442892596927351 bayes_pls_golite062009
    2 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.96

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle