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Protein Overview: CG17838-PF

General Information:
Name(s) found: CG17838-PF / FBpp0083368 [FlyBase]
Description(s) found:
Found 24 descriptions.
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  • This gene is referred to in FlyBase by the symbol Dmel\CG17838 (CG17838, FBgn0038826). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is 3R:16582451..16631963. It has the cytological map location 92F12-93A1. Based on sequence similarity, it is predicted to have molecular function</span>: mRNA binding. The biological processes in which it is involved are not known. 22 alleles are reported. No phenotypic data is available. It has 8 annotated transcripts and 8 annotated polypeptides. [FlyBase]
    • Organism: Drosophila melanogaster
    Length: 529 amino acids

    Gene Ontology:
    Cellular Component: precatalytic spliceosome [IDA]
    heterogeneous nuclear ribonucleoprotein complex [ISS]
    Biological Process: nuclear mRNA splicing, via spliceosome [IC]
    Molecular Function: nucleotide binding [IEA]
    nucleic acid binding [IEA]
    mRNA binding [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAEGNGELLD DINQKADDRG DGERTEDYPK LLEYGLDKKV AGKLDEIYKT GKLAHAELDE  60
   61 RALDALKEFP VDGALNVLGQ FLESNLEHVS NKSAYLCGVM KTYRQKSRAS QQGVAAPATV 120
  121 KGPDEDKIKK ILERTGYTLD VTTGQRKYGG PPPHWEGNVP GNGCEVFCGK IPKDMYEDEL 180
  181 IPLFENCGII WDLRLMMDPM TGTNRGYAFV TFTNREAAVN AVRQLDNHEI KPGKCLKINI 240
  241 SVPNLRLFVG NIPKSKGKDE ILEEFGKLTA GLYEVIIYSS PDDKKKNRGF CFLEYESHKA 300
  301 ASLAKRRLGT GRIKVWGCDI IVDWADPQEE PDEQTMSKVK VLYVRNLTQD VSEDKLKEQF 360
  361 EQYGKVERVK KIKDYAFIHF EDRDSAVEAM RGLNGKEIGA SNIEVSLAKP PSDKKKKEEI 420
  421 LRARERRMMQ MMQARPGIVG NLSPTHPSIM SLTPMRPGAR MPLRTPIPRE YVVGKRKFDG 480
  481 GHQNPADVKR RYPSGLIGNG GSWGSLPLPQ QPLGTNGEQW YMDTFSAWS

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..156] deduced N/A No confident structure predictions are available.
    2 View Details [157..243] PSI-BLAST 13.69897 No description for 2dguA was found.
    3 View Details [244..444] FFAS03 5.15 Poly(A)-binding protein
    4 View Details [445..529] MSA 2.315996 View MSA. No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2 No functions predicted.
    3
    Term Confidence Notes
  • RNA binding
    		•  2.55209579427288 bayes_pls_golite062009
  • binding
    		•  2.12674248708253 bayes_pls_golite062009
  • nucleic acid binding
    		•  1.64322098035939 bayes_pls_golite062009
  • mRNA binding
    		•  1.10126462659919 bayes_pls_golite062009
    4 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.98

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle