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Protein Overview: Srp72-PA

General Information:
Name(s) found: Srp72-PA / FBpp0083319 [FlyBase]
Description(s) found:
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  • gi|7300635|gb|AAF55784.1| Srp72 [Drosophila melanogaster] [NCBI NR]
  • gi|24648453|ref|NP_650898.1| Srp72 [Drosophila melanogaster] [NCBI NR]
  • The gene Srp72 is referred to in FlyBase by the symbol Dmel\Srp72 (CG5434, FBgn0038810). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is 3R:16414437..16416762. It has the cytological map location 92F2. Based on sequence similarity, it is predicted to have molecular function</span>: 7S RNA binding. There is experimental evidence that it is involved in the biological process</span>: dsRNA transport. One allele is reported. No phenotypic data is available. It has one annotated transcript and one annotated polypeptide. [FlyBase]
  • >CG5434-PA translation from_gene[CG5434 CG5434 FBgn0038810] seq_release:3 mol_weight=72852 cds_boundaries:(3R:16,414,564..16,416,694[+]) aa_length:650 transcript_info:[CG5434-RA seq_release:3] gene_info:[gene symbol:CG5434 FBgn0038810 gene_boundaries:( [hmr_yeast5_DM3-1_pombe.fasta]
  • (Q9VDK7) CG5434 protein [DrosMelano7227.FASTAC.txt]
  • (AE003731) CG5434 gene product [Drosophila melanogaster] [yeastflysequest.fasta]
  • CG5434-PA [Drosophila melanogaster]gi|24648453|ref|NP_650898.1| CG5434-PA [Drosophila melanogaster] [nrdb_11152004_Chlamydomonas]
  • type=protein; loc=3R:join(16414547..16414658,16414720..16415747,16415810..16416492,16416551..16416680); ID=FBpp0083319; name=Srp72-PA; parent=FBgn0038810,FBtr0083911; dbxref=FlyBase:FBpp0083319,FlyBase_Annotation_IDs:CG5434-PA,GB_protein:AAF55784.1,REFSEQ [fly-100309-contam.fasta]
  • Srp72 CG5434-PA [Drosophila melanogaster] [nr-271106-contam.fasta]
  • CG5434-PA [Drosophila melanogaster] [nr-271106-contam.fasta]
  • type=protein; loc=3R:join(16414547..16414658,16414720..16415747,16415810..16416492,16416551..16416680); ID=FBpp0083319; name=Srp72-PA; parent=FBgn0038810,FBtr0083911; dbxref=FlyBase:FBpp0083319,FlyBase_Annotation_IDs:CG5434-PA,GB_protein:AAF55784.1,REFSEQ:NP_650898,GB_protein:AAF55784; MD5=040a8a2268a3619c2fdc11bcf983d81e; length=650; release=r5.16; species=Dmel; [fly-contam-His-TEV-Tub4complex.fasta]
  • type=protein; loc=3R:join(16414547..16414658,16414720..16415747,16415810..16416492,16416551..16416680); ID=FBpp0083319; name=Srp72-PA; parent=FBgn0038810,FBtr0083911; dbxref=FlyBase:FBpp0083319,FlyBase_Annotation_IDs:CG5434-PA,GB_protein:AAF55784.1,REFSEQ:NP_650898,GB_protein:AAF55784; MD5=040a8a2268a3619c2fdc11bcf983d81e; length=650; release=r5.21; species=Dmel; [Other_drosophila_na_09-09-2009_reversed.fasta]
  • Srp72 OS=Drosophila melanogaster GN=Srp72 PE=1 SV=1 [UniProt_drosophila_07-01-2011_reversed.fasta]
  • type=protein; loc=3R:join(16414547..16414658,16414720..16415747,16415810..16416492,16416551..16416680); ID=FBpp0083319; name=Srp72-PA; parent=FBgn0038810,FBtr0083911; dbxref=FlyBase:FBpp0083319,FlyBase_Annotation_IDs:CG5434-PA,GB_protein:AAF55784.1,REFSEQ:NP_650898,GB_protein:AAF55784,FlyMine:FBpp0083319,modMine:FBpp0083319; MD5=040a8a2268a3619c2fdc11bcf983d81e; length=650; release=r5.46; species=Dmel; [fly-062812-sfps-sandra-contam.fasta]
  • FI16653p1 OS=Drosophila melanogaster GN=Srp72 PE=2 SV=1 [UniProt_D_Melanogaster_07132012_07-13-2012_reversed.fasta]
  • type=protein; loc=3R:join(20588825..20588936,20588998..20590025,20590088..20590770,20590829..20590958); ID=FBpp0083319; name=Srp72-PA; parent=FBgn0038810,FBtr0083911; dbxref=FlyBase:FBpp0083319,FlyBase_Annotation_IDs:CG5434-PA,GB_protein:AAF55784.1,REFSEQ:NP_650898,GB_protein:AAF55784,FlyMine:FBpp0083319,modMine:FBpp0083319; MD5=040a8a2268a3619c2fdc11bcf983d81e; length=650; release=r6.02; species=Dmel; [fly-2014-05-contam.fasta]
  • type=protein; loc=3R:join(20588825..20588936,20588998..20590025,20590088..20590770,20590829..20590958); ID=FBpp0083319; name=Srp72-PA; parent=FBgn0038810,FBtr0083911; dbxref=FlyBase:FBpp0083319,FlyBase_Annotation_IDs:CG5434-PA,GB_protein:AAF55784.1,REFSEQ:NP_650898,GB_protein:AAF55784,FlyMine:FBpp0083319,modMine:FBpp0083319; MD5=040a8a2268a3619c2fdc11bcf983d81e; length=650; release=r6.07; species=Dmel; [fly-08202015-contam.fasta]
  • Signal recognition particle subunit SRP72 OS=Drosophila melanogaster GN=Srp72 PE=1 SV=1 [DROME.fasta.20160308]
  • FBpp0083319 type=protein; loc=3R:join(20588825..20588936,20588998..20590025,20590088..20590770,20590829..20590958); ID=FBpp0083319; name=Srp72-PA; parent=FBgn0038810,FBtr0083911; dbxref=FlyBase:FBpp0083319,FlyBase_Annotation_IDs:CG5434-PA,GB_protein:AAF55784.1,REFSEQ:NP_650898,GB_protein:AAF55784,FlyMine:FBpp0083319,modMine:FBpp0083319; MD5=040a8a2268a3619c2fdc11bcf983d81e; length=650; release=r6.09; species=Dmel; [dmel-all-translation-r6.09.fasta]
  • [fly-122215-dmel-6-09-contam.fasta]
  • type=protein; loc=3R:join(20588825..20588936,20588998..20590025,20590088..20590770,20590829..20590958); ID=FBpp0083319; name=Srp72-PA; parent=FBgn0038810,FBtr0083911; dbxref=FlyBase:FBpp0083319,FlyBase_Annotation_IDs:CG5434-PA,GB_protein:AAF55784.1,REFSEQ:NP_650898,GB_protein:AAF55784,UniProt/TrEMBL:Q9VDK7,FlyMine:FBpp0083319,modMine:FBpp0083319; MD5=040a8a2268a3619c2fdc11bcf983d81e; length=650; release=r6.14; species=Dmel; [fly-dmel-jan2017-sandracontam.fasta]
    • Organism: Drosophila melanogaster
    Length: 650 amino acids

    Gene Ontology:
    Cellular Component: signal recognition particle, endoplasmic reticulum targeting [ISS]
    Biological Process: SRP-dependent cotranslational protein targeting to membrane [ISS]
    dsRNA transport [IMP]
    Molecular Function: 7S RNA binding [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKDANPKEA LIKAAYADVN KFGNNQEFDK AVKAVNRILG VAPDDPTALH CKVVCLVQLS  60
   61 KFEEAYKFIE KNRLSSLFFE KAYCEYQLNK QQQALKTIDD AGLQPLPPNL KELRTQVLYR 120
  121 LERYDECLDS YRDIIKNTSD EYEEERRTNL SAVAANLAVD QTKEVPEVPE DTYEQYFNSA 180
  181 CIQANRQKYA EAERKLRTSE KLCLEDECAS EEEIIEEVDV IRVQLAYVLQ LQGKTKEASS 240
  241 IYADCLRHKP KDAALVAVAS NNLVVVNKDQ NVFDSKKKIR AALADACESR LTSRQKQVIA 300
  301 LNNCLLALYT NAGDQVQQLS QKLAQTYPQV EFEALLIRCT QLAKDRKHKE AIEQLQKFAA 360
  361 AHKSHEFVSK FAIIQLQLLQ GNRKDAIETL LSLGEAKYKP GVVSALVSLY LGTDNKTAAS 420
  421 ALLKSAVDWY KKNEVSSGDL SDMWRQAAEF HLRGGASETA ASSLEELLKL NPNDTKVLAQ 480
  481 LVIAYAQFQP KRALELSRKL PKLETLTTAS EIDALEAANW VMSAKAAKKT ANTKVEPSPS 540
  541 TPLEKKKNRN RKRKGKLPKN YNAEVAPDPE RWLPKYERTG FRKKRGGARG KDVIKGSQGM 600
  601 ASGAADQYDM SSRVNLTKNS PATPVYQETA PGPRQQHRKG GHKKKKGGRF

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..650] PSI-BLAST 9.154902 Clathrin D6 Coat


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle