YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: Srp72-PA
Organism: Drosophila melanogaster
Length: 650 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Srp72-PA.

Description E-value Query
Range
Subject
Range
gi|113475191, gi... - gi|113475191|ref|YP_721252.1| glycosyl transferase family protein [Trichodesmium erythraeum IMS101],...
319.0 [0..2] [585..36]

Back

Predicted Domain #1
Region A:
Residues: [1-650]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKDANPKEA LIKAAYADVN KFGNNQEFDK AVKAVNRILG VAPDDPTALH CKVVCLVQLS  60
   61 KFEEAYKFIE KNRLSSLFFE KAYCEYQLNK QQQALKTIDD AGLQPLPPNL KELRTQVLYR 120
  121 LERYDECLDS YRDIIKNTSD EYEEERRTNL SAVAANLAVD QTKEVPEVPE DTYEQYFNSA 180
  181 CIQANRQKYA EAERKLRTSE KLCLEDECAS EEEIIEEVDV IRVQLAYVLQ LQGKTKEASS 240
  241 IYADCLRHKP KDAALVAVAS NNLVVVNKDQ NVFDSKKKIR AALADACESR LTSRQKQVIA 300
  301 LNNCLLALYT NAGDQVQQLS QKLAQTYPQV EFEALLIRCT QLAKDRKHKE AIEQLQKFAA 360
  361 AHKSHEFVSK FAIIQLQLLQ GNRKDAIETL LSLGEAKYKP GVVSALVSLY LGTDNKTAAS 420
  421 ALLKSAVDWY KKNEVSSGDL SDMWRQAAEF HLRGGASETA ASSLEELLKL NPNDTKVLAQ 480
  481 LVIAYAQFQP KRALELSRKL PKLETLTTAS EIDALEAANW VMSAKAAKKT ANTKVEPSPS 540
  541 TPLEKKKNRN RKRKGKLPKN YNAEVAPDPE RWLPKYERTG FRKKRGGARG KDVIKGSQGM 600
  601 ASGAADQYDM SSRVNLTKNS PATPVYQETA PGPRQQHRKG GHKKKKGGRF 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 9.154902
Match: 1xi4A
Description: Clathrin D6 Coat
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle