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Protein Overview: tinc-PA, FBpp030...

General Information:
Name(s) found: FBpp0307968 [FlyBase]
FBpp0307967 [FlyBase]
FBpp0293444 [FlyBase]
tinc-PA / FBpp0088712 [FlyBase]
Description(s) found:
Found 41 descriptions.
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  • type=protein; loc=3R:join(13678096..13678405,13678737..13678852,13683509..13683743,13690092..13691918,13692604..13693072,13694208..13694946,13695648..13696493); ID=FBpp0307968; name=tinc-PG; parent=FBgn0261649,FBtr0337039; dbxref=REFSEQ:NP_001262686,GB_protein:AGB96066,FlyBase:FBpp0307968,FlyBase_Annotation_IDs:CG31247-PG; MD5=414ec75d2e6a6cedff5ba32e44c240c6; length=1513; release=r5.56; species=Dmel; [FlyBase]
  • type=protein; loc=3R:join(13678096..13678405,13678737..13678852,13683509..13683743,13690092..13691918,13692604..13693072,13694208..13694946,13695648..13696493); ID=FBpp0307967; name=tinc-PF; parent=FBgn0261649,FBtr0337038; dbxref=REFSEQ:NP_788688,GB_protein:AAO41574,FlyBase:FBpp0307967,FlyBase_Annotation_IDs:CG31247-PF; MD5=414ec75d2e6a6cedff5ba32e44c240c6; length=1513; release=r5.56; species=Dmel; [FlyBase]
  • type=protein; loc=3R:join(13678096..13678405,13678737..13678852,13683509..13683743,13690092..13691918,13692604..13693072,13694208..13694946,13695648..13696493); ID=FBpp0293444; name=tinc-PE; parent=FBgn0261649,FBtr0304905; dbxref=REFSEQ:NP_788687,GB_protein:AAO41573,FlyBase:FBpp0293444,FlyBase_Annotation_IDs:CG31247-PE; MD5=414ec75d2e6a6cedff5ba32e44c240c6; length=1513; release=r5.56; species=Dmel; [FlyBase]
  • The gene tincar is referred to in FlyBase by the symbol Dmel\tinc (CG31247, FBgn0038554). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is 3R:13677739..13698239. It has the cytological map location 90C7-90C8. Its molecular function is unknown. There is experimental evidence that it is involved in the biological process</span>: regulation of eye photoreceptor cell development. 7 alleles are reported. The phenotypes of these alleles are annotated with: primary pigment cell; cone cell; eye photoreceptor cell; ommatidium; pigment cell. It has 4 annotated transcripts and 4 annotated polypeptides. [FlyBase]
    • Organism: Drosophila melanogaster
    Length: 1513 amino acids

    Gene Ontology:
    Cellular Component: plasma membrane [NAS]
    Biological Process: regulation of eye photoreceptor cell development [IMP]
    Molecular Function: molecular_function [ND]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGGKHQGSGA GASSGGGSLN SSLCNSVMTN ATTASSSLTQ QQQQLQAKYI KSKRHQSRYT  60
   61 SLQHSGHDSG SYLHLNSLWS IWYGVMLTLF QGYLAMHGAY RFLGCSLIPW KIEPVAELNL 120
  121 QIVLSGVVFI LLPVFFTSAV FKVGNLANDG IKLATGARER RCTLSPHDGL EEESRGGTLR 180
  181 ALWTHGGPTA AFVHIVIALC LLLPRLLLEA RIIENGLLPK EQIWATELDF VVINRRNLMA 240
  241 MSVVGATPFP RHHQPSNQQQ SHHQHGRLNL TANSLEQDEE DYFNDTMFTA IRGVPAGGNN 300
  301 NLFDLRPDRM ANGRKAAKTT ATTRTTTTAN KLDAGKGQYF EVPDLINQDI DEEERQELEE 360
  361 AIRGEEDDGD EGVGVGEEGT VIMPDFDELA PRTAVGTSTT TAKASSDADK LNVENWQQLG 420
  421 TLGKADASSS SSSTTSTTTT TTTSTTTTAA TTTSTRGTST TTTTTTIKPM EITTSRQSAH 480
  481 HHHGKSRKHH KHHNKQRQQQ PPRRHHVASH EQAILESFPE EETTTRDSSI HRVRPEVLPE 540
  541 LPIPSTPVSA SNSKIIAIKA KNQKRRISKR AAGVEIEPEY LLGDANINSS EFVAKSNEEE 600
  601 PEESEDFELE DGDFQAVPAL TPAPPAEPNG PKSGQDYVRL DGFAGMLQLF FGIDKPIDVA 660
  661 IFSQPPSAEF VNLLCALLVW SVRYPAVFWN TSKAFACVFS LQMVVAALDI ILGYVGISNL 720
  721 YKLQIYAEAM PVHQPGLILN AVVTLALYLL STALVLASSM VMYLYGHGRL ATRMRDRSII 780
  781 TLKTHQTWIY FAHCASLCFV LALAVVKAPL LNDLSATYKN NLHCPTFLAA LVGVTHLLLW 840
  841 IVIWLCLTIK RRWHFKLPPL DSTYGGLLGK SSAQPLLMSS GQRTGSNSSS SGCNSTSTTV 900
  901 NGGDSKPDMM STATSTELGM GMGMGIGGGI NGGMGGTGMG LAAQEDIYWP KLTPSSPKLK 960
  961 VTFNEVTSTS DDVLLIGDQE QTDGKRHTSR GASVCFASAT GEVDDGEYAT LRAATAGAVV1020
 1021 GITMGSMKRG LSNTSVGVSL LHLSEYDELP PPPPANLHHQ QQQQQQQQQR QAHSFAHGHP1080
 1081 HDYANLSGLG GISDDNISEE GKLLACVRDD SITYASTSDL EPPQPSAQAP PPPPPLPIKG1140
 1141 APVPQPPAVM PHSAGIYGRA PQAMPEMMQL SPEHHHNPLQ HSLQHPQHHP LQQQQQKQQT1200
 1201 PQHPLQQQGN PHQHLVSPLA PVTVAVHTNE AHIASSSTPR CLRRADSGVP NEALTPRSDT1260
 1261 TSTTESTNTT SPPERAPSES SSGVHSGEER ELEVIIRPRA NSKPPPRPPQ PPIQEEPYGR1320
 1321 CTNMRMSSFN ADPAATSSAV INSATLPPQR SVPEQKFDYT AHCSTMPLPV GCHSQQLAGS1380
 1381 GNGYASTSAM TSSMGGGGMP PLPPSQVSSF MTPNSMHYAN ASVALGNVSG QQQPHTTLPN1440
 1441 GVRYSNPHFL RRLPHVTKAA ESPYGHLGYG AGHHAFAKLP HETHPTIPED RDSANYSMAS1500
 1501 DQDCGLYVTA QLH

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..217] MSA 1.007927 View MSA. No confident structure predictions are available.
    2 View Details [218..431] deduced N/A No confident structure predictions are available.
    3 View Details [432..634] deduced N/A No confident structure predictions are available.
    4 View Details [635..855] deduced N/A No confident structure predictions are available.
    5 View Details [856..1513] PSI-BLAST 5.30103 No description for 1y0fA was found.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
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