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Protein Overview: CG5213-PA

General Information:
Name(s) found: CG5213-PA / FBpp0082602 [FlyBase]
Description(s) found:
Found 20 descriptions.
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  • This gene is referred to in FlyBase by the symbol Dmel\CG5213 (CG5213, FBgn0038345). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is 3R:11320324..11321348. It has the cytological map location 88F6. Based on sequence similarity, it is predicted to have molecular function</span>: mRNA binding. The biological processes in which it is involved are not known. One allele is reported. No phenotypic data is available. It has one annotated transcript and one annotated polypeptide. [FlyBase]
    • Organism: Drosophila melanogaster
    Length: 251 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: nucleotide binding [IEA]
    RNA binding [IEA]
    mRNA binding [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTKKESSVPT LCWGYAGIRG MFQTGRPVDP PPPLPNLRMK TNLILNYLPQ DMTESELHRL  60
   61 FSKFGEIRKA KIIRHRRTGI SCCYGFVDYV SERQAAAAVN GMDGYETRGK RLKVAFARPS 120
  121 EYESTSSSLY VGNLPTYMDE KKVRELFATY GNIVDVNLLR HKFNNRSRGV AFLQFELVRD 180
  181 AEVAKYGMDR YMIEGASRPL TVKFVEREKK GSSSTSSGSQ YKDKRKSSPP PYKRRERTND 240
  241 HHVSKRSRDS D

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..251] PSI-BLAST 32.69897 Hu antigen D (Hud)

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  0.950788308762215 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.29562225149076 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.92

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle