YRC Public Data Repository - Protein Structure Prediction

Protein:	CG5213-PA
Organism:	Drosophila melanogaster
Length:	251 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CG5213-PA.

Description	E-value	Query Range	Subject Range
gi\|12851808 - gi\|12851808\|dbj\|BAB29173.1\| unnamed protein product [Mus musculus]	172.0	[0..1]	[251..13]
gi\|125991914, gi... - gi\|76614096\|ref\|XP_880452.1\| PREDICTED: similar to ELAV (embryonic lethal, abnormal vision, Drosophi... gi\|109476909, gi... - gi\|109476909\|ref\|XP_001063220.1\| PREDICTED: similar to ELAV-like 4 isoform 8 [Rattus norvegicus], gi... gi\|73976985 - gi\|73976985\|ref\|XP_859918.1\| PREDICTED: similar to ELAV (embryonic lethal, abnormal vision, Drosophi... gi\|123255798 - gi\|123255798\|emb\|CAM19663.1\| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu antigen...	172.0	[0..1]	[251..8]
ELAV4_MOUSE - ELAV-like protein 4 OS=Mus musculus GN=Elavl4 PE=1 SV=1 gi\|109475246, gi... - gi\|109476911\|ref\|XP_001063164.1\| PREDICTED: similar to ELAV-like protein 4 (Paraneoplastic encephalo... gi\|76614090 - gi\|76614090\|ref\|XP_870192.1\| PREDICTED: similar to ELAV-like protein 4 (Paraneoplastic encephalomyel... ENSOCUP00000013976 - pep:novel chromosome:oryCun2:13:116474176:116574244:-1 gene:ENSOCUG00000016262 transcript:ENSOCUT000...	172.0	[0..1]	[251..13]
gi\|1911579 - gi\|1911579\|gb\|AAB50733.1\| HuD [Rattus sp.] gi\|30851490 - gi\|30851490\|gb\|AAH52451.1\| Elavl4 protein [Mus musculus] ELAV4_RAT - ELAV-like protein 4 OS=Rattus norvegicus GN=Elavl4 PE=1 SV=1	172.0	[0..1]	[251..1]

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Predicted Domain #1

Region A:
Residues: [1-251]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTKKESSVPT LCWGYAGIRG MFQTGRPVDP PPPLPNLRMK TNLILNYLPQ DMTESELHRL  60
   61 FSKFGEIRKA KIIRHRRTGI SCCYGFVDYV SERQAAAAVN GMDGYETRGK RLKVAFARPS 120
  121 EYESTSSSLY VGNLPTYMDE KKVRELFATY GNIVDVNLLR HKFNNRSRGV AFLQFELVRD 180
  181 AEVAKYGMDR YMIEGASRPL TVKFVEREKK GSSSTSSGSQ YKDKRKSSPP PYKRRERTND 240
  241 HHVSKRSRDS D

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	32.69897
Match:	1fxlA
Description:	Hu antigen D (Hud)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	0.950788308762215	bayes_pls_golite062009
nucleic acid binding	0.29562225149076	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: