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Protein Overview: RpS5b-PA

General Information:
Name(s) found: RpS5b-PA / FBpp0082465 [FlyBase]
Description(s) found:
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  • gi|7299942|gb|AAF55116.1| ribosomal protein S5b [Drosophila melanogaster] [NCBI NR]
  • gi|55584099|sp|Q9VFE4.1|RS5B_DROME RecName: Full=40S ribosomal protein S5b [NCBI NR]
  • gi|21357837|ref|NP_650407.1| ribosomal protein S5b [Drosophila melanogaster] [NCBI NR]
  • gi|17945411|gb|AAL48760.1| RE17836p [Drosophila melanogaster] [NCBI NR]
  • 40S ribosomal protein S5b OS=Drosophila melanogaster GN=RpS5b PE=2 SV=1 [Swiss-Prot]
  • The gene Ribosomal protein S5b is referred to in FlyBase by the symbol Dmel\RpS5b (CG7014, FBgn0038277). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is 3R:10726154..10727310. It has the cytological map location 88D6. Based on sequence similarity, it is predicted to have molecular function</span>: structural constituent of ribosome. Based on sequence similarity, it is predicted to be involved in the biological process</span>: translation. 4 alleles are reported. No phenotypic data is available. It has one annotated transcript and one annotated polypeptide. [FlyBase]
  • >CG7014-PA translation from_gene[CG7014 CG7014 FBgn0038277] seq_release:3 mol_weight=25717 cds_boundaries:(3R:10,726,270..10,727,217[-]) aa_length:230 transcript_info:[CG7014-RA seq_release:3] gene_info:[gene symbol:CG7014 FBgn0038277 gene_boundaries:( [hmr_yeast5_DM3-1_pombe.fasta]
  • (Q9VFE4) CG7014 protein (RE17836p) [DrosMelano7227.FASTAC.txt]
  • (AE003706) CG7014 gene product [Drosophila melanogaster] [yeastflysequest.fasta]
  • CG7014-PA [Drosophila melanogaster]gi|17945411|gb|AAL48760.1| RE17836p [Drosophila melanogaster]gi|21357837|ref|NP_650407.1| CG7014-PA [Drosophila melanogaster]gi|55584099|sp|Q9VFE4|RS5B_DROME 40S ribosomal protein S5b [nrdb_11152004_Chlamydomonas]
  • type=protein; loc=3R:complement(10726249..10726416,10726675..10727199); ID=FBpp0082465; name=RpS5b-PA; parent=FBgn0038277,FBtr0083006; dbxref=FlyBase:FBpp0082465,FlyBase_Annotation_IDs:CG7014-PA,GB_protein:AAF55116.1,REFSEQ:NP_650407,GB_protein:AAF55116; [fly-100309-contam.fasta]
  • Ribosomal protein S5b CG7014-PA [Drosophila melanogaster] [nr-271106-contam.fasta]
  • RE17836p [Drosophila melanogaster] [nr-271106-contam.fasta]
  • 40S ribosomal protein S5b [nr-271106-contam.fasta]
  • CG7014-PA [Drosophila melanogaster] [nr-271106-contam.fasta]
  • type=protein; loc=3R:complement(10726249..10726416,10726675..10727199); ID=FBpp0082465; name=RpS5b-PA; parent=FBgn0038277,FBtr0083006; dbxref=FlyBase:FBpp0082465,FlyBase_Annotation_IDs:CG7014-PA,GB_protein:AAF55116.1,REFSEQ:NP_650407,GB_protein:AAF55116; MD5=cb483975a84cfa53b58648ab80ce652e; length=230; release=r5.16; species=Dmel; [fly-contam-His-TEV-Tub4complex.fasta]
  • type=protein; loc=3R:complement(10726249..10726416,10726675..10727199); ID=FBpp0082465; name=RpS5b-PA; parent=FBgn0038277,FBtr0083006; dbxref=FlyBase:FBpp0082465,FlyBase_Annotation_IDs:CG7014-PA,GB_protein:AAF55116.1,REFSEQ:NP_650407,GB_protein:AAF55116; MD5=cb483975a84cfa53b58648ab80ce652e; length=230; release=r5.21; species=Dmel; [Other_drosophila_na_09-09-2009_reversed.fasta]
  • type=protein; loc=3R:complement(10726249..10726416,10726675..10727199); ID=FBpp0082465; name=RpS5b-PA; parent=FBgn0038277,FBtr0083006; dbxref=FlyBase:FBpp0082465,FlyBase_Annotation_IDs:CG7014-PA,GB_protein:AAF55116.1,REFSEQ:NP_650407,GB_protein:AAF55116,FlyMine:FBpp0082465,modMine:FBpp0082465; MD5=cb483975a84cfa53b58648ab80ce652e; length=230; release=r5.46; species=Dmel; [fly-062812-sfps-sandra-contam.fasta]
  • type=protein; loc=3R:complement(join(14900953..14901477,14900527..14900694)); ID=FBpp0082465; name=RpS5b-PA; parent=FBgn0038277,FBtr0083006; dbxref=FlyBase:FBpp0082465,FlyBase_Annotation_IDs:CG7014-PA,GB_protein:AAF55116.1,REFSEQ:NP_650407,GB_protein:AAF55116,FlyMine:FBpp0082465,modMine:FBpp0082465; MD5=cb483975a84cfa53b58648ab80ce652e; length=230; release=r6.02; species=Dmel; [fly-2014-05-contam.fasta]
  • type=protein; loc=3R:complement(join(14900953..14901477,14900527..14900694)); ID=FBpp0082465; name=RpS5b-PA; parent=FBgn0038277,FBtr0083006; dbxref=FlyBase:FBpp0082465,FlyBase_Annotation_IDs:CG7014-PA,GB_protein:AAF55116.1,REFSEQ:NP_650407,GB_protein:AAF55116,FlyMine:FBpp0082465,modMine:FBpp0082465; MD5=cb483975a84cfa53b58648ab80ce652e; length=230; release=r6.07; species=Dmel; [fly-08202015-contam.fasta]
  • FBpp0082465 type=protein; loc=3R:complement(join(14900953..14901477,14900527..14900694)); ID=FBpp0082465; name=RpS5b-PA; parent=FBgn0038277,FBtr0083006; dbxref=FlyBase:FBpp0082465,FlyBase_Annotation_IDs:CG7014-PA,GB_protein:AAF55116.1,REFSEQ:NP_650407,GB_protein:AAF55116,FlyMine:FBpp0082465,modMine:FBpp0082465; MD5=cb483975a84cfa53b58648ab80ce652e; length=230; release=r6.09; species=Dmel; [dmel-all-translation-r6.09.fasta]
  • [fly-122215-dmel-6-09-contam.fasta]
  • type=protein; loc=3R:complement(join(14900953..14901477,14900527..14900694)); ID=FBpp0082465; name=RpS5b-PA; parent=FBgn0038277,FBtr0083006; dbxref=FlyBase:FBpp0082465,FlyBase_Annotation_IDs:CG7014-PA,GB_protein:AAF55116.1,REFSEQ:NP_650407,GB_protein:AAF55116,UniProt/Swiss-Prot:Q9VFE4,FlyMine:FBpp0082465,modMine:FBpp0082465; MD5=cb483975a84cfa53b58648ab80ce652e; length=230; release=r6.14; species=Dmel; [fly-dmel-jan2017-sandracontam.fasta]
    • Organism: Drosophila melanogaster
    Length: 230 amino acids

    Gene Ontology:
    Cellular Component: lipid particle [IDA]
    cytosolic small ribosomal subunit [ISS]
    Biological Process: translation [ISS]
    Molecular Function: RNA binding [IEA]
    structural constituent of ribosome [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSEEVVESSS QEASQVIPQE QEDWADDVVT TMPAQEVTEW PEIKLFGRWA CDDISISDIS  60
   61 LQDYIAVKEK FARYLPHSAG RYAAKRFRKA QCPIVERLTS GLMMKGRSNG KKLLACRIVK 120
  121 HAFEIIHLLT SENPLQVTVN AIVNSGPRED STRIGRAGTV RRQAVDVSPL RRVNQAIWLI 180
  181 CTGAREAAFR NIKTVAECLA DELINAAKGS SNSYAIKKKD ELERVAKSNR

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..77] FFAS03 2.13 Ribosomal protein S7
    2 View Details [78..230] PSI-BLAST 46.39794 Structure of the ribosomal 80S-eEF2-sordarin complex from yeast obtained by docking atomic models for RNA and protein components into a 11.7 A cryo-EM map. This file, 1S1H, Contains 40S subunit. The 60S Ribosomal Subunit Is In File 1S1I.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle