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Protein Overview: RnpS1-PA

General Information:
Name(s) found: RnpS1-PA / FBpp0081544 [FlyBase]
Description(s) found:
Found 23 descriptions.
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  • The gene RNA-binding protein S1 is referred to in FlyBase by the symbol Dmel\RnpS1 (CG16788, FBgn0037707). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is 3R:5377765..5379469. It has the cytological map location 85D24. Based on sequence similarity, it is predicted to have molecular function</span>: mRNA binding. It is reported to be involved in the biological process</span>: nuclear-transcribed mRNA catabolic process, nonsense-mediated decay. 5 alleles are reported. The phenotype of these alleles is annotated with: intersegmental nerve. It has one annotated transcript and one annotated polypeptide. [FlyBase]
    • Organism: Drosophila melanogaster
    Length: 374 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: nuclear-transcribed mRNA catabolic process, nonsense-mediated decay [NAS]
    Molecular Function: nucleotide binding [IEA]
    nucleic acid binding [IEA]
    mRNA binding [ISS][NAS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MARAQSLAGE GEKEKDNKEK VAKEKDGKAT SGSSRRDRER KRRGSASSSS DSRSSTSDSS  60
   61 SSRSSSGSSR SSSSSSSDSS SSSSSSSSDS DRSEKNRRRG GGAAGKDKDK DKPSARSRSR 120
  121 SRTRSPRRVS KSPRPGSKAR KEPERDRDRR SRSRDRARRA GSNDRAAADS NNVKRERSRS 180
  181 ASRSRSPRRR GRGSVERTPP PKRRERSRSR TRSPSPKQVR IHVGRLTRNV TKDHVFEIFS 240
  241 SFGDVKNVEF PVDRFHPNFG RGVAFVEYAT PEDCESAMKH MDGGQIDGQE ITVSPVVLVK 300
  301 QRPPMRRPSP PMRRPQNNRW RSPPQFNRFN NRGGGGGGGG GRRQSPMRNR RSPRRRSRSP 360
  361 IRRRRRSNSS DSSR

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..99] MSA 4.255996 View MSA. No confident structure predictions are available.
    2 View Details [100..374] PSI-BLAST 30.39794 Crystal Structure of UP1 Complexed With d(TAGG(6MI)TTAGGG): A Human Telomeric Repeat Containing 6-methyl-8-(2-deoxy-beta-ribofuranosyl)isoxanthopteridine (6MI)

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • binding
    		•  0.950788308762215 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.29562225149076 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle