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Protein Overview: CG11985-PA

General Information:
Name(s) found: CG11985-PA / FBpp0081484 [FlyBase]
Description(s) found:
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  • gi|7299128|gb|AAF54327.1| CG11985 [Drosophila melanogaster] [NCBI NR]
  • gi|24645240|ref|NP_652189.1| CG11985 [Drosophila melanogaster] [NCBI NR]
  • gi|20140916|sp|Q9VHI4.1|SF3B5_DROME RecName: Full=Probable splicing factor 3B subunit 5; Short=SF3b5; AltName: Full=Pre-mRNA-splicing factor SF3b 10 kDa subunit [NCBI NR]
  • Probable splicing factor 3B subunit 5 OS=Drosophila melanogaster GN=CG11985 PE=1 SV=1 [Swiss-Prot]
  • (Q9VHI4) Probable splicing factor 3B subunit 5 (SF3b5) (Pre-mRNA splicing factor SF3b 10 kDa subunit) [Swiss-Prot]
  • This gene is referred to in FlyBase by the symbol Dmel\CG11985 (CG11985, FBgn0040534). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is 3R:4840694..4841005. It has the cytological map location 85C2. Its molecular function is unknown. There is experimental evidence that it is involved in the biological process</span>: mitotic spindle organization. 4 alleles are reported. No phenotypic data is available. It has one annotated transcript and one annotated polypeptide. [FlyBase]
  • >CG11985-PA translation from_gene[CG11985 CG11985 FBgn0040534] seq_release:3 mol_weight=9971 cds_boundaries:(3R:4,840,747..4,841,001[-]) aa_length:85 transcript_info:[CG11985-RA seq_release:3] gene_info:[gene symbol:CG11985 FBgn0040534 gene_boundaries: [hmr_yeast5_DM3-1_pombe.fasta]
  • (AE003681) CG11985 gene product [Drosophila melanogaster] [yeastflysequest.fasta]
  • CG11985-PA [Drosophila melanogaster]gi|24645240|ref|NP_652189.1| CG11985-PA [Drosophila melanogaster]gi|20140916|sp|Q9VHI4|S3B5_DROME Probable splicing factor 3B subunit 5 (SF3b5) (Pre-mRNA splicing factor SF3b 10 kDa subunit) [nrdb_11152004_Chlamydomonas]
  • type=protein; loc=3R:complement(4840729..4840986); ID=FBpp0081484; name=CG11985-PA; parent=FBgn0040534,FBtr0082006; dbxref=FlyBase:FBpp0081484,FlyBase_Annotation_IDs:CG11985-PA,GB_protein:AAF54327.1,REFSEQ:NP_652189,GB_protein:AAF54327; MD5=18994d26209d09 [fly-100309-contam.fasta]
  • Probable splicing factor 3B subunit 5 (SF3b5) (Pre-mRNA-splicing factor SF3b 10 kDa subunit) [nr-271106-contam.fasta]
  • CG11985-PA [Drosophila melanogaster] [nr-271106-contam.fasta]
  • type=protein; loc=3R:complement(4840729..4840986); ID=FBpp0081484; name=CG11985-PA; parent=FBgn0040534,FBtr0082006; dbxref=FlyBase:FBpp0081484,FlyBase_Annotation_IDs:CG11985-PA,GB_protein:AAF54327.1,REFSEQ:NP_652189,GB_protein:AAF54327; MD5=18994d26209d09a46d9531759b066c04; length=85; release=r5.16; species=Dmel; [fly-contam-His-TEV-Tub4complex.fasta]
  • type=protein; loc=3R:complement(4840729..4840986); ID=FBpp0081484; name=CG11985-PA; parent=FBgn0040534,FBtr0082006; dbxref=FlyBase:FBpp0081484,FlyBase_Annotation_IDs:CG11985-PA,GB_protein:AAF54327.1,REFSEQ:NP_652189,GB_protein:AAF54327; MD5=18994d26209d09a46d9531759b066c04; length=85; release=r5.21; species=Dmel; [Other_drosophila_na_09-09-2009_reversed.fasta]
  • type=protein; loc=3R:complement(4840729..4840986); ID=FBpp0081484; name=CG11985-PA; parent=FBgn0040534,FBtr0082006; dbxref=FlyBase:FBpp0081484,FlyBase_Annotation_IDs:CG11985-PA,GB_protein:AAF54327.1,REFSEQ:NP_652189,GB_protein:AAF54327,FlyMine:FBpp0081484,modMine:FBpp0081484; MD5=18994d26209d09a46d9531759b066c04; length=85; release=r5.46; species=Dmel; [fly-062812-sfps-sandra-contam.fasta]
  • type=protein; loc=3R:complement(9015007..9015264); ID=FBpp0081484; name=CG11985-PA; parent=FBgn0040534,FBtr0082006; dbxref=FlyBase:FBpp0081484,FlyBase_Annotation_IDs:CG11985-PA,GB_protein:AAF54327.1,REFSEQ:NP_652189,GB_protein:AAF54327,FlyMine:FBpp0081484,modMine:FBpp0081484; MD5=18994d26209d09a46d9531759b066c04; length=85; release=r6.02; species=Dmel; [fly-2014-05-contam.fasta]
  • type=protein; loc=3R:complement(9015007..9015264); ID=FBpp0081484; name=CG11985-PA; parent=FBgn0040534,FBtr0082006; dbxref=FlyBase:FBpp0081484,FlyBase_Annotation_IDs:CG11985-PA,GB_protein:AAF54327.1,REFSEQ:NP_652189,GB_protein:AAF54327,FlyMine:FBpp0081484,modMine:FBpp0081484; MD5=18994d26209d09a46d9531759b066c04; length=85; release=r6.07; species=Dmel; [fly-08202015-contam.fasta]
  • FBpp0081484 type=protein; loc=3R:complement(9015007..9015264); ID=FBpp0081484; name=CG11985-PA; parent=FBgn0040534,FBtr0082006; dbxref=FlyBase:FBpp0081484,FlyBase_Annotation_IDs:CG11985-PA,GB_protein:AAF54327.1,REFSEQ:NP_652189,GB_protein:AAF54327,FlyMine:FBpp0081484,modMine:FBpp0081484; MD5=18994d26209d09a46d9531759b066c04; length=85; release=r6.09; species=Dmel; [dmel-all-translation-r6.09.fasta]
  • [fly-122215-dmel-6-09-contam.fasta]
  • type=protein; loc=3R:complement(9015007..9015264); ID=FBpp0081484; name=Sf3b5-PA; parent=FBgn0040534,FBtr0082006; dbxref=FlyBase:FBpp0081484,FlyBase_Annotation_IDs:CG11985-PA,GB_protein:AAF54327.1,REFSEQ:NP_652189,GB_protein:AAF54327,UniProt/Swiss-Prot:Q9VHI4,FlyMine:FBpp0081484,modMine:FBpp0081484; MD5=18994d26209d09a46d9531759b066c04; length=85; release=r6.14; species=Dmel; [fly-dmel-jan2017-sandracontam.fasta]
    • Organism: Drosophila melanogaster
    Length: 85 amino acids

    Gene Ontology:
    Cellular Component: nucleus [ISS]
    precatalytic spliceosome [IDA]
    Biological Process: mitotic spindle organization [IMP]
    nuclear mRNA splicing, via spliceosome [IC][ISS]
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGERYNIHSQ LEHLQSKYIG TGHADTTKFE WLTNQHRDSL ASYMGHYDIL NYFAIAENES  60
   61 KARVRFNLME RMLQPCGPPP EKLED

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..85] Pfam 68.568636 No description for PF07189.2 was found. No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle