YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: FBpp0293838

General Information:
Name(s) found: FBpp0293838 [FlyBase]
Description(s) found:
SHOW ONLY BEST
  • gi|28573161|ref|NP_476697.3| polychaetoid, isoform B [Drosophila melanogaster] [NCBI NR]
  • gi|28381195|gb|AAF54300.3| polychaetoid, isoform B [Drosophila melanogaster] [NCBI NR]
  • type=protein; loc=3R:complement(4654037..4654040,4657864..4657996,4658076..4658367,4658426..4658666,4659697..4659796,4659861..4660009,4660079..4660671,4660999..4661232,4664114..4664711,4664774..4666336,4668392..4668561,4670638..4670676); ID=FBpp0293838; name=pyd-PB; parent=FBgn0262614,FBtr0305295; dbxref=REFSEQ:NP_476697,GB_protein:AAF54300,FlyBase:FBpp0293838,FlyBase:FBpp0088723,FlyBase_Annotation_IDs:CG31349-PB,FlyBase_Annotation_IDs:CG43140-PB; MD5=fdda34c1d147fe913ca9c99849991fe6; length=1371; release=r5.56; species=Dmel; [FlyBase]
  • The gene polychaetoid is referred to in FlyBase by the symbol Dmel\pyd (CG31349, FBgn0003177). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is 3R:4653200..4756978. It has the cytological map location 85B2-85B7. Based on sequence similarity, it is predicted to have molecular function</span>: guanylate kinase activity. There is experimental evidence that it is involved in the biological process</span>: cell-cell adhesion; fusion cell fate specification; branch fusion, open tracheal system. 50 alleles are reported. The phenotypes of these alleles are annotated with 26 unique terms, many of which group under: peripheral nervous system; organ system; nervous system; adult segment; adult mesothoracic segment; external compound sense organ; cuticle; embryonic/larval tracheal system; embryonic dorsal branch; embryonic nervous system; embryonic tracheal system; embryonic ganglionic branch; cephalopharyngeal skeleton; garland cell. It has 8 annotated transcripts and 8 annotated polypeptides. [FlyBase]
  • >CG31349-PB translation from_gene[CG31349 pyd FBgn0003177] seq_release:3 mol_weight=148817 cds_boundaries:(3R:4,654,055..4,670,691[-]) aa_length:1371 transcript_info:[CG31349-RB seq_release:3] gene_info:[gene symbol:pyd synonyms:[CG9763 CG11782 CG9729 [hmr_yeast5_DM3-1_pombe.fasta]
  • (Q9VHK4) CG31349-PB [DrosMelano7227.FASTAC.txt]
  • CG31349-PB, isoform B [Drosophila melanogaster]gi|28573161|ref|NP_476697.3| CG31349-PB [Drosophila melanogaster] [nrdb_11152004_Chlamydomonas]
  • type=protein; loc=3R:complement(4654037..4654040,4657864..4657996,4658076..4658367,4658426..4658666,4659697..4659796,4659861..4660009,4660079..4660671,4660999..4661232,4664114..4664711,4664774..4666336,4668392..4668561,4670638..4670676); ID=FBpp0088723; n [fly-100309-contam.fasta]
  • polychaetoid CG31349-PB, isoform B [Drosophila melanogaster] [nr-271106-contam.fasta]
  • CG31349-PB, isoform B [Drosophila melanogaster] [nr-271106-contam.fasta]
  • type=protein; loc=3R:complement(4654037..4654040,4657864..4657996,4658076..4658367,4658426..4658666,4659697..4659796,4659861..4660009,4660079..4660671,4660999..4661232,4664114..4664711,4664774..4666336,4668392..4668561,4670638..4670676); ID=FBpp0088723; name=pyd-PB; parent=FBgn0003177,FBtr0089782; dbxref=FlyBase_Annotation_IDs:CG31349-PB,FlyBase:FBpp0088723,FlyBase:FBpp0003660,GB_protein:AAF54300.3,REFSEQ:NP_476697,GB_protein:AAF54300; MD5=fdda34c1d147fe913ca9c99849991fe6; length=1371; release=r5.16; species=Dmel; [fly-contam-His-TEV-Tub4complex.fasta]
  • type=protein; loc=3R:complement(4654037..4654040,4657864..4657996,4658076..4658367,4658426..4658666,4659697..4659796,4659861..4660009,4660079..4660671,4660999..4661232,4664114..4664711,4664774..4666336,4668392..4668561,4670638..4670676); ID=FBpp0088723; name=pyd-PB; parent=FBgn0003177,FBtr0089782; dbxref=FlyBase_Annotation_IDs:CG31349-PB,FlyBase:FBpp0088723,FlyBase:FBpp0003660,GB_protein:AAF54300.3,REFSEQ:NP_476697,GB_protein:AAF54300; MD5=fdda34c1d147fe913ca9c99849991fe6; length=1371; release=r5.21; species=Dmel; [Other_drosophila_na_09-09-2009_reversed.fasta]
  • Polychaetoid, isoform B OS=Drosophila melanogaster GN=pyd PE=2 SV=3 [UniProt_drosophila_07-01-2011_reversed.fasta]
  • type=protein; loc=3R:complement(4654037..4654040,4657864..4657996,4658076..4658367,4658426..4658666,4659697..4659796,4659861..4660009,4660079..4660671,4660999..4661232,4664114..4664711,4664774..4666336,4668392..4668561,4670638..4670676); ID=FBpp0293838; name=pyd-PB; parent=FBgn0262614,FBtr0305295; dbxref=REFSEQ:NP_476697,GB_protein:AAF54300,FlyBase:FBpp0293838,FlyBase:FBpp0088723,FlyBase_Annotation_IDs:CG31349-PB,FlyBase_Annotation_IDs:CG43140-PB; MD5=fdda34c1d147fe913ca9c99849991fe6; length=1371; release=r5.46; species=Dmel; [fly-062812-sfps-sandra-contam.fasta]
  • type=protein; loc=3R:complement(join(8844916..8844954,8842670..8842839,8839052..8840614,8838392..8838989,8835277..8835510,8834357..8834949,8834139..8834287,8833975..8834074,8832704..8832944,8832354..8832645,8832142..8832274,8828315..8828318)); ID=FBpp0293838; name=pyd-PB; parent=FBgn0262614,FBtr0305295; dbxref=REFSEQ:NP_476697,GB_protein:AAF54300,FlyBase:FBpp0293838,FlyBase:FBpp0088723,FlyBase_Annotation_IDs:CG31349-PB,FlyBase_Annotation_IDs:CG43140-PB; MD5=fdda34c1d147fe913ca9c99849991fe6; length=1371; release=r6.02; species=Dmel; [fly-2014-05-contam.fasta]
  • type=protein; loc=3R:complement(join(8844916..8844954,8842670..8842839,8839052..8840614,8838392..8838989,8835277..8835510,8834357..8834949,8834139..8834287,8833975..8834074,8832704..8832944,8832354..8832645,8832142..8832274,8828315..8828318)); ID=FBpp0293838; name=pyd-PB; parent=FBgn0262614,FBtr0305295; dbxref=REFSEQ:NP_476697,GB_protein:AAF54300,FlyBase:FBpp0293838,FlyBase:FBpp0088723,FlyBase_Annotation_IDs:CG31349-PB,FlyBase_Annotation_IDs:CG43140-PB; MD5=fdda34c1d147fe913ca9c99849991fe6; length=1371; release=r6.07; species=Dmel; [fly-08202015-contam.fasta]
  • Isoform of A0A0B4K6Y7, Polychaetoid, isoform B OS=Drosophila melanogaster GN=pyd PE=1 SV=3 [DROME.fasta.20160308]
  • FBpp0293838 type=protein; loc=3R:complement(join(8844916..8844954,8842670..8842839,8839052..8840614,8838392..8838989,8835277..8835510,8834357..8834949,8834139..8834287,8833975..8834074,8832704..8832944,8832354..8832645,8832142..8832274,8828315..8828318)); ID=FBpp0293838; name=pyd-PB; parent=FBgn0262614,FBtr0305295; dbxref=REFSEQ:NP_476697,GB_protein:AAF54300,FlyBase:FBpp0293838,FlyBase:FBpp0088723,FlyBase_Annotation_IDs:CG31349-PB,FlyBase_Annotation_IDs:CG43140-PB; MD5=fdda34c1d147fe913ca9c99849991fe6; length=1371; release=r6.09; species=Dmel; [dmel-all-translation-r6.09.fasta]
  • [fly-122215-dmel-6-09-contam.fasta]
  • type=protein; loc=3R:complement(join(8844916..8844954,8842670..8842839,8839052..8840614,8838392..8838989,8835277..8835510,8834357..8834949,8834139..8834287,8833975..8834074,8832704..8832944,8832354..8832645,8832142..8832274,8828315..8828318)); ID=FBpp0293838; name=pyd-PB; parent=FBgn0262614,FBtr0305295; dbxref=REFSEQ:NP_476697,GB_protein:AAF54300,FlyBase:FBpp0293838,FlyBase:FBpp0088723,FlyBase_Annotation_IDs:CG31349-PB,FlyBase_Annotation_IDs:CG43140-PB,UniProt/TrEMBL:Q9VHK4; MD5=fdda34c1d147fe913ca9c99849991fe6; length=1371; release=r6.14; species=Dmel; [fly-dmel-jan2017-sandracontam.fasta]
    • Organism: Drosophila melanogaster
    Length: 1371 amino acids

    Gene Ontology:
    Cellular Component: adherens junction [NAS][TAS]
    cell-cell adherens junction [IDA]
    Biological Process: dorsal closure [NAS][TAS]
    cell-cell adhesion [IMP]
    fusion cell fate specification [IMP]
    establishment or maintenance of cell polarity [NAS]
    JNK cascade [NAS]
    branch fusion, open tracheal system [IMP]
    regulation of JNK cascade [NAS]
    Molecular Function: protein binding [IEA]
    guanylate kinase activity [ISS][NAS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKFPDYVPNN MLVGDRTTWE YHTVAVTRVP GYGFGIAVSG GRDNPHFANG DPSIAVSDVL  60
   61 KGGPAEDRLQ VNDRIISVNG VSLENVEYAT AVQVLRDSGN TVQLVVKRRV PLNPINAAGA 120
  121 VQHQHSHSLS SVGLMANGSG GVAPTPITSL SQPNSLNSSL VQNASSGQPI KVTLTKGGKK 180
  181 DDYGVVLGCR LFVKEISSKA REQLNANGYS LQEGDIITRI HNTNCGDTMS LKEAKKIIDG 240
  241 CKERLNLVVL RDITNQTAVS QLNLNNSASH QASGNIYATH QPQVSGCSSS NNNLEDPYLP 300
  301 GGASYSSQNL YVQPPTRTSN GPNINGNGLN DEKSNLTPRG RSRGPIMDGV SLQQLDRPVT 360
  361 PTRGRSAAID EPPRPPPPRG SSGGAAQEDF YSSRRQLYEE RQSAEPRFIS FQKEGSVGIR 420
  421 LTGGNEAGIF VTAVQPGSPA SLQGLMPGDK ILKVNDMDMN GVTREEAVLF LLSLQDRIDL 480
  481 IVQYCKEEYD EVVTNQRGDS FHIKTHFHCD NPSKGEMAFK AGDVFRVIDT LHNGVVGSWQ 540
  541 VLKIGRGHQE MQRGVIPNKS RAEELATAQF NATKKEMNAN ESRGNFFRRR RSTHRRSKSL 600
  601 SRENWDDVVF SDSISKFPAY ERVVLRHPGF VRPVVLFGPV SDLARERLAK DFPDKFSTPL 660
  661 QDDDKSAATS GKCRIVRLSN IRDVMDRGKH ALLDITPNAV DRLNYAQFYP VVIFLKTDSK 720
  721 HVIKQLRHGL PKAAHKSSKK LLEQCQKLER VWSHIFSTQI ALSDEESWYR KLRDSIDLQQ 780
  781 SGAVWMSESK PVESLSDDFL FPMTTSRLSY ASSPESDLEL SPGPSASLSL GNLPQLVKAS 840
  841 SDPSIATNQD NLDRDRDIIG EGLPPPYTVP YDHAVPANPN RRQTMDSSKY SIYGTNVPPQ 900
  901 QQQPGVGGDT AAVRPQSLYG INAPDLPPRI DRQSKPGDIP LNTSGSSSRN GTLGRSAQER 960
  961 LFGKAVVQDD VQAEYITRNA LVGSGAAETL DRQQQQQQQT HASLERQARL NAQLKANGVG1020
 1021 AGGGGASTYD SVSSYDSYNN TQMAMQNLGR LGPNAPDDLK SVPNANGRPL PPTGQSHEYG1080
 1081 RTPHDHRSFG GPNDLNRQSS PGRPHYHDMN ASRNIDPRNG TPQRPSNLGL ESSPRKPLVE1140
 1141 TKTDYGKYSR NNSVTQADYT KLPKTAPHGV VPPPNVSNGQ GQMNGSGTPS SNGSGPFKPV1200
 1201 PPPKPKNYRP PVQSGGSSGS GGTTPWENGD SGSPRSPNGF YYPPTPSHHH YGQQATPGSP1260
 1261 SNGHMQPPPP QQQQPTYGGS NGNYGQAPPP QSYPQANGYN GNGHHYNGGS GTGPYIAPHR1320
 1321 GMPPPIGNLP PHTPERHALD LAGSREQRGS AFELYRKPQI GATAGHHHNM R

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..111] PSI-BLAST 33.0 No description for 2h2cA was found.
    2 View Details [112..265] PSI-BLAST 17.0 No description for 2rczA was found.
    3 View Details [266..392] deduced N/A No confident structure predictions are available.
    4 View Details [393..495] PSI-BLAST 26.69897 PDZ3 domain of PSD-95 protein complexed with KKETPV peptide ligand
    5 View Details [496..787] PSI-BLAST 89.30103 Psd-95; Guanylate kinase-like domain of Psd-95
    6 View Details [788..1371] PSI-BLAST 51.69897 No description for 1y0fB was found.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.92

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle