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Protein Overview: Atg13-PA

General Information:
Name(s) found: Atg13-PA / FBpp0081333 [FlyBase]
Description(s) found:
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  • gi|74947989|sp|Q9VHR6.1|K0652_DROME RecName: Full=UPF0630 protein KIAA0652 homolog [NCBI NR]
  • gi|7299032|gb|AAF54234.1| CG7331 [Drosophila melanogaster] [NCBI NR]
  • gi|21355105|ref|NP_649796.1| CG7331 [Drosophila melanogaster] [NCBI NR]
  • gi|16768876|gb|AAL28657.1| LD09558p [Drosophila melanogaster] [NCBI NR]
  • UPF0630 protein KIAA0652 homolog OS=Drosophila melanogaster GN=CG7331 PE=1 SV=1 [Swiss-Prot]
  • Autophagy-related protein 13 homolog OS=Drosophila melanogaster GN=Atg13 PE=1 SV=1 [Swiss-Prot]
  • The gene Autophagy-specific gene 13 is referred to in FlyBase by the symbol Dmel\Atg13 (CG7331, FBgn0261108). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is 3R:4175524..4178539. It has the cytological map location 84F13-84F14. Its molecular function is unknown. There is experimental evidence that it is involved in the biological process</span>: autophagy. 11 alleles are reported. No phenotypic data is available. It has one annotated transcript and one annotated polypeptide. [FlyBase]
  • >CG7331-PA translation from_gene[CG7331 CG7331 FBgn0037582] seq_release:3 mol_weight=56927 cds_boundaries:(3R:4,175,871..4,177,439[+]) aa_length:523 transcript_info:[CG7331-RA seq_release:3] gene_info:[gene symbol:CG7331 FBgn0037582 gene_boundaries:(3R [hmr_yeast5_DM3-1_pombe.fasta]
  • (Q9VHR6) CG7331 protein (LD09558P) [DrosMelano7227.FASTAC.txt]
  • (AE003678) CG7331 gene product [Drosophila melanogaster] [yeastflysequest.fasta]
  • CG7331-PA [Drosophila melanogaster]gi|16768876|gb|AAL28657.1| LD09558p [Drosophila melanogaster]gi|21355105|ref|NP_649796.1| CG7331-PA [Drosophila melanogaster] [nrdb_11152004_Chlamydomonas]
  • type=protein; loc=3R:4175856..4177427; ID=FBpp0081333; name=CG7331-PA; parent=FBgn0037582,FBtr0081843; dbxref=FlyBase:FBpp0081333,FlyBase_Annotation_IDs:CG7331-PA,GB_protein:AAF54234.1,REFSEQ:NP_649796,GB_protein:AAF54234; MD5=82bec90e713b56e07332740cc1ff [fly-100309-contam.fasta]
  • LD09558p [Drosophila melanogaster] [nr-271106-contam.fasta]
  • CG7331-PA [Drosophila melanogaster] [nr-271106-contam.fasta]
  • type=protein; loc=3R:4175856..4177427; ID=FBpp0081333; name=CG7331-PA; parent=FBgn0037582,FBtr0081843; dbxref=FlyBase:FBpp0081333,FlyBase_Annotation_IDs:CG7331-PA,GB_protein:AAF54234.1,REFSEQ:NP_649796,GB_protein:AAF54234; MD5=82bec90e713b56e07332740cc1ff7efa; length=523; release=r5.16; species=Dmel; [fly-contam-His-TEV-Tub4complex.fasta]
  • type=protein; loc=3R:4175856..4177427; ID=FBpp0081333; name=Atg13-PA; parent=FBgn0261108,FBtr0081843; dbxref=FlyBase:FBpp0081333,FlyBase_Annotation_IDs:CG7331-PA,GB_protein:AAF54234.1,REFSEQ:NP_649796,GB_protein:AAF54234; MD5=82bec90e713b56e07332740cc1ff7efa; length=523; release=r5.21; species=Dmel; [Other_drosophila_na_09-09-2009_reversed.fasta]
  • type=protein; loc=3R:4175856..4177427; ID=FBpp0081333; name=Atg13-PA; parent=FBgn0261108,FBtr0081843; dbxref=FlyBase:FBpp0081333,FlyBase_Annotation_IDs:CG7331-PA,GB_protein:AAF54234.1,REFSEQ:NP_649796,GB_protein:AAF54234,FlyMine:FBpp0081333,modMine:FBpp0081333; MD5=82bec90e713b56e07332740cc1ff7efa; length=523; release=r5.46; species=Dmel; [fly-062812-sfps-sandra-contam.fasta]
  • type=protein; loc=3R:8350134..8351705; ID=FBpp0081333; name=Atg13-PA; parent=FBgn0261108,FBtr0081843; dbxref=FlyBase:FBpp0081333,FlyBase_Annotation_IDs:CG7331-PA,GB_protein:AAF54234.1,REFSEQ:NP_649796,GB_protein:AAF54234,FlyMine:FBpp0081333,modMine:FBpp0081333; MD5=82bec90e713b56e07332740cc1ff7efa; length=523; release=r6.02; species=Dmel; [fly-2014-05-contam.fasta]
  • type=protein; loc=3R:8350134..8351705; ID=FBpp0081333; name=Atg13-PA; parent=FBgn0261108,FBtr0081843; dbxref=FlyBase:FBpp0081333,FlyBase_Annotation_IDs:CG7331-PA,GB_protein:AAF54234.1,REFSEQ:NP_649796,GB_protein:AAF54234,FlyMine:FBpp0081333,modMine:FBpp0081333; MD5=82bec90e713b56e07332740cc1ff7efa; length=523; release=r6.07; species=Dmel; [fly-08202015-contam.fasta]
  • FBpp0081333 type=protein; loc=3R:8350134..8351705; ID=FBpp0081333; name=Atg13-PA; parent=FBgn0261108,FBtr0081843; dbxref=FlyBase:FBpp0081333,FlyBase_Annotation_IDs:CG7331-PA,GB_protein:AAF54234.1,REFSEQ:NP_649796,GB_protein:AAF54234,FlyMine:FBpp0081333,modMine:FBpp0081333; MD5=82bec90e713b56e07332740cc1ff7efa; length=523; release=r6.09; species=Dmel; [dmel-all-translation-r6.09.fasta]
  • [fly-122215-dmel-6-09-contam.fasta]
  • type=protein; loc=3R:8350134..8351705; ID=FBpp0081333; name=Atg13-PA; parent=FBgn0261108,FBtr0081843; dbxref=FlyBase:FBpp0081333,FlyBase_Annotation_IDs:CG7331-PA,GB_protein:AAF54234.1,REFSEQ:NP_649796,GB_protein:AAF54234,UniProt/Swiss-Prot:Q9VHR6,FlyMine:FBpp0081333,modMine:FBpp0081333; MD5=82bec90e713b56e07332740cc1ff7efa; length=523; release=r6.14; species=Dmel; [fly-dmel-jan2017-sandracontam.fasta]
    • Organism: Drosophila melanogaster
    Length: 523 amino acids

    Gene Ontology:
    Cellular Component: cellular_component [ND]
    Biological Process: autophagy [IMP]
    Molecular Function: molecular_function [ND]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSAQRLNAAE RDLEKFIKFL VLKSTQVVVQ SRLGEKMQTQ CNPLAGSDWF NIAVQDHPEV  60
   61 LDETKRALNL KTGESILQRL PLCVEISLKT TEGDQMVLEV WSLDLLQPQN GASPATNDLN 120
  121 PEGQTLKAAH AIYNRMGIML KSLISLTRTT PAYKLSRRQC PDSYGIFYRI YVDRPQVHTL 180
  181 GEGHKHVKIG QLSTIVGSLV MSVAYRTKLT ISPTAAQSES NTIMLKSDHF RPATDANTPG 240
  241 NQQQTQNGTV VAKKLGLGAL NPAQGTADRR FIDIEKPLRP GAFTDMGKLK QYTEDDFVLP 300
  301 ETPPFEWLLR GRGSVESLNR LDNNSVASVN ISNNNNSTQD SKFNQISNLN NNSAGFKSFE 360
  361 KNSENSVSPI KSLLIPASAT ATYRHHSEPS LQPPPDDDNL LKELHFPFAS PTSHVNDLAK 420
  421 FYRECYHAPP LKGLNELQAE ISSISSTPPA SSGSGGVAAC GPTAAATAIA TSSADASAMD 480
  481 DLSRQLEQFE TSLEDYDKLV SQFGLTGSSS TGSRSSGGLQ MSN

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..233] deduced N/A No confident structure predictions are available.
    2 View Details [234..445] MSA 5.182997 View MSA. No confident structure predictions are available.
    3 View Details [446..523] deduced N/A No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.90

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle