YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: FBpp0306232, RpL...

General Information:
Name(s) found: FBpp0306232 [FlyBase]
RpLP0-PA / FBpp0078134 [FlyBase]
Description(s) found:
SHOW ONLY BEST
  • gi|7296522|gb|AAF51807.1| ribosomal protein LP0 [Drosophila melanogaster] [NCBI NR]
  • pir||R5FFP0 acidic ribosomal protein P0 - fruit fly (Drosophila melanogaster) [NCBI NR]
  • gi|60678177|gb|AAX33595.1| GH01513p [Drosophila melanogaster] [NCBI NR]
  • gi|576817|gb|AAA53372.1| DNA repair protein [NCBI NR]
  • gi|18447548|gb|AAL68335.1| RE74511p [Drosophila melanogaster] [NCBI NR]
  • gi|17737731|ref|NP_524211.1| ribosomal protein LP0 [Drosophila melanogaster] [NCBI NR]
  • gi|113987|sp|P19889.1|RLA0_DROME RecName: Full=60S acidic ribosomal protein P0; AltName: Full=DNA-(apurinic or apyrimidinic site) lyase; AltName: Full=Apurinic-apyrimidinic endonuclease [NCBI NR]
  • 60S acidic ribosomal protein P0 OS=Drosophila melanogaster GN=RpLP0 PE=1 SV=1 [Swiss-Prot]
  • type=protein; loc=3L:join(22069388..22069441,22069516..22070415); ID=FBpp0306232; name=RpLP0-PB; parent=FBgn0000100,FBtr0334113; dbxref=REFSEQ:NP_001262202,GB_protein:AGB94895,FlyBase:FBpp0306232,FlyBase_Annotation_IDs:CG7490-PB; MD5=86e1796e988a2ee9e406941fb4905ecb; length=317; release=r5.56; species=Dmel; [FlyBase]
  • The gene Ribosomal protein LP0 is referred to in FlyBase by the symbol Dmel\RpLP0 (CG7490, FBgn0000100). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is 3L:22069142..22070587. It has the cytological map location 79B2. Based on sequence similarity, it is predicted to have molecular function</span>: structural constituent of ribosome. Based on sequence similarity, it is predicted to be involved in the biological process</span>: translation. 11 alleles are reported. No phenotypic data is available. It has one annotated transcript and one annotated polypeptide. [FlyBase]
  • >CG7490-PA translation from_gene[CG7490 RpP0 FBgn0000100] seq_release:3 mol_weight=34203 cds_boundaries:(3L:21,993,566..21,994,590[+]) aa_length:317 transcript_info:[CG7490-RA seq_release:3] gene_info:[gene symbol:RpP0 FBgn0000100 gene_boundaries:(3L:2 [hmr_yeast5_DM3-1_pombe.fasta]
  • (P19889) 60S acidic ribosomal protein P0 (DNA-(apurinic or apyrimidinic site) lyase) (EC 4.2.99.18) (Apurinic-apyrimidinic endonuclease) [DrosMelano7227.FASTAC.txt]
  • (AE003596) RpP0 gene product [Drosophila melanogaster] [yeastflysequest.fasta]
  • CG7490-PA [Drosophila melanogaster]gi|18447548|gb|AAL68335.1| RE74511p [Drosophila melanogaster]gi|17737731|ref|NP_524211.1| CG7490-PA [Drosophila melanogaster]gi|71140|pir||R5FFP0 acidic ribosomal protein P0 - fruit fly (Drosophila melanogaster)gi|11 [nrdb_11152004_Chlamydomonas]
  • type=protein; loc=3L:join(22069388..22069441,22069516..22070415); ID=FBpp0078134; name=RpLP0-PA; parent=FBgn0000100,FBtr0078481; dbxref=FlyBase:FBpp0078134,FlyBase_Annotation_IDs:CG7490-PA,GB_protein:AAF51807.1,REFSEQ:NP_524211,GB_protein:AAF51807; MD5=86 [fly-100309-contam.fasta]
  • CG7490-PA [Drosophila melanogaster] [nr-271106-contam.fasta]
  • DNA repair protein [nr-271106-contam.fasta]
  • Ribosomal protein LP0 CG7490-PA [Drosophila melanogaster] [nr-271106-contam.fasta]
  • RE74511p [Drosophila melanogaster] [nr-271106-contam.fasta]
  • GH01513p [Drosophila melanogaster] [nr-271106-contam.fasta]
  • 60S acidic ribosomal protein P0 (DNA-(apurinic or apyrimidinic site) lyase) (Apurinic-apyrimidinic endonuclease) [nr-271106-contam.fasta]
  • type=protein; loc=3L:join(22069388..22069441,22069516..22070415); ID=FBpp0078134; name=RpLP0-PA; parent=FBgn0000100,FBtr0078481; dbxref=FlyBase:FBpp0078134,FlyBase_Annotation_IDs:CG7490-PA,GB_protein:AAF51807.1,REFSEQ:NP_524211,GB_protein:AAF51807; MD5=86e1796e988a2ee9e406941fb4905ecb; length=317; release=r5.16; species=Dmel; [fly-contam-His-TEV-Tub4complex.fasta]
  • type=protein; loc=3L:join(22069388..22069441,22069516..22070415); ID=FBpp0078134; name=RpLP0-PA; parent=FBgn0000100,FBtr0078481; dbxref=FlyBase:FBpp0078134,FlyBase_Annotation_IDs:CG7490-PA,GB_protein:AAF51807.1,REFSEQ:NP_524211,GB_protein:AAF51807; MD5=86e1796e988a2ee9e406941fb4905ecb; length=317; release=r5.21; species=Dmel; [Other_drosophila_na_09-09-2009_reversed.fasta]
  • type=protein; loc=3L:join(22069388..22069441,22069516..22070415); ID=FBpp0078134; name=RpLP0-PA; parent=FBgn0000100,FBtr0078481; dbxref=FlyBase:FBpp0078134,FlyBase_Annotation_IDs:CG7490-PA,GB_protein:AAF51807.1,REFSEQ:NP_524211,GB_protein:AAF51807,FlyMine:FBpp0078134,modMine:FBpp0078134; MD5=86e1796e988a2ee9e406941fb4905ecb; length=317; release=r5.46; species=Dmel; [fly-062812-sfps-sandra-contam.fasta]
  • type=protein; loc=3L:join(22069388..22069441,22069516..22070415); ID=FBpp0306232; name=RpLP0-PB; parent=FBgn0000100,FBtr0334113; dbxref=FlyBase:FBpp0306232,FlyBase_Annotation_IDs:CG7490-PB; MD5=86e1796e988a2ee9e406941fb4905ecb; length=317; release=r5.46; species=Dmel; [fly-062812-sfps-sandra-contam.fasta]
  • type=protein; loc=3L:join(22076288..22076341,22076416..22077315); ID=FBpp0078134; name=RpLP0-PA; parent=FBgn0000100,FBtr0078481; dbxref=FlyBase:FBpp0078134,FlyBase_Annotation_IDs:CG7490-PA,GB_protein:AAF51807.1,REFSEQ:NP_524211,GB_protein:AAF51807,FlyMine:FBpp0078134,modMine:FBpp0078134; MD5=86e1796e988a2ee9e406941fb4905ecb; length=317; release=r6.02; species=Dmel; [fly-2014-05-contam.fasta]
  • type=protein; loc=3L:join(22076288..22076341,22076416..22077315); ID=FBpp0306232; name=RpLP0-PB; parent=FBgn0000100,FBtr0334113; dbxref=REFSEQ:NP_001262202,GB_protein:AGB94895,FlyBase:FBpp0306232,FlyBase_Annotation_IDs:CG7490-PB; MD5=86e1796e988a2ee9e406941fb4905ecb; length=317; release=r6.02; species=Dmel; [fly-2014-05-contam.fasta]
  • type=protein; loc=3L:join(22076288..22076341,22076416..22077315); ID=FBpp0306232; name=RpLP0-PB; parent=FBgn0000100,FBtr0334113; dbxref=REFSEQ:NP_001262202,GB_protein:AGB94895,FlyBase:FBpp0306232,FlyBase_Annotation_IDs:CG7490-PB; MD5=86e1796e988a2ee9e406941fb4905ecb; length=317; release=r6.07; species=Dmel; [fly-08202015-contam.fasta]
  • type=protein; loc=3L:join(22076288..22076341,22076416..22077315); ID=FBpp0078134; name=RpLP0-PA; parent=FBgn0000100,FBtr0078481; dbxref=FlyBase:FBpp0078134,FlyBase_Annotation_IDs:CG7490-PA,GB_protein:AAF51807.1,REFSEQ:NP_524211,GB_protein:AAF51807,FlyMine:FBpp0078134,modMine:FBpp0078134; MD5=86e1796e988a2ee9e406941fb4905ecb; length=317; release=r6.07; species=Dmel; [fly-08202015-contam.fasta]
  • Isoform of P19889, 60S acidic ribosomal protein P0 OS=Drosophila melanogaster GN=RpLP0 PE=3 SV=1 [DROME.fasta.20160308]
  • FBpp0078134 type=protein; loc=3L:join(22076288..22076341,22076416..22077315); ID=FBpp0078134; name=RpLP0-PA; parent=FBgn0000100,FBtr0078481; dbxref=FlyBase:FBpp0078134,FlyBase_Annotation_IDs:CG7490-PA,GB_protein:AAF51807.1,REFSEQ:NP_524211,GB_protein:AAF51807,FlyMine:FBpp0078134,modMine:FBpp0078134; MD5=86e1796e988a2ee9e406941fb4905ecb; length=317; release=r6.09; species=Dmel; [dmel-all-translation-r6.09.fasta]
  • FBpp0306232 type=protein; loc=3L:join(22076288..22076341,22076416..22077315); ID=FBpp0306232; name=RpLP0-PB; parent=FBgn0000100,FBtr0334113; dbxref=REFSEQ:NP_001262202,GB_protein:AGB94895,FlyBase:FBpp0306232,FlyBase_Annotation_IDs:CG7490-PB; MD5=86e1796e988a2ee9e406941fb4905ecb; length=317; release=r6.09; species=Dmel; [dmel-all-translation-r6.09.fasta]
  • [fly-122215-dmel-6-09-contam.fasta]
  • type=protein; loc=3L:join(22076288..22076341,22076416..22077315); ID=FBpp0078134; name=RpLP0-PA; parent=FBgn0000100,FBtr0078481; dbxref=FlyBase:FBpp0078134,FlyBase_Annotation_IDs:CG7490-PA,GB_protein:AAF51807.1,REFSEQ:NP_524211,GB_protein:AAF51807,UniProt/Swiss-Prot:P19889,FlyMine:FBpp0078134,modMine:FBpp0078134; MD5=86e1796e988a2ee9e406941fb4905ecb; length=317; release=r6.14; species=Dmel; [fly-dmel-jan2017-sandracontam.fasta]
  • type=protein; loc=3L:join(22076288..22076341,22076416..22077315); ID=FBpp0306232; name=RpLP0-PB; parent=FBgn0000100,FBtr0334113; dbxref=REFSEQ:NP_001262202,GB_protein:AGB94895,FlyBase:FBpp0306232,FlyBase_Annotation_IDs:CG7490-PB,UniProt/Swiss-Prot:P19889; MD5=86e1796e988a2ee9e406941fb4905ecb; length=317; release=r6.14; species=Dmel; [fly-dmel-jan2017-sandracontam.fasta]
    • Organism: Drosophila melanogaster
    Length: 317 amino acids

    Gene Ontology:
    Cellular Component: lipid particle [IDA]
    nucleus [NAS]
    cytoplasm [NAS]
    cytosolic large ribosomal subunit [ISS]
    ribosome [NAS]
    Biological Process: DNA repair [NAS]
    ribosome biogenesis [IEA]
    translational elongation [IEA]
    translation [ISS]
    Molecular Function: structural constituent of ribosome [ISS][NAS]
    DNA-(apurinic or apyrimidinic site) lyase activity [NAS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVRENKAAWK AQYFIKVVEL FDEFPKCFIV GADNVGSKQM QNIRTSLRGL AVVLMGKNTM  60
   61 MRKAIRGHLE NNPQLEKLLP HIKGNVGFVF TKGDLAEVRD KLLESKVRAP ARPGAIAPLH 120
  121 VIIPAQNTGL GPEKTSFFQA LSIPTKISKG TIEIINDVPI LKPGDKVGAS EATLLNMLNI 180
  181 SPFSYGLIVN QVYDSGSIFS PEILDIKPED LRAKFQQGVA NLAAVCLSVG YPTIASAPHS 240
  241 IANGFKNLLA IAATTEVEFK EATTIKEYIK DPSKFAAAAS ASAAPAAGGA TEKKEEAKKP 300
  301 ESESEEEDDD MGFGLFD

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data



    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.92

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle