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Protein Overview: SsRbeta-PA

General Information:
Name(s) found: SsRbeta-PA / FBpp0075209 [FlyBase]
Description(s) found:
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  • gi|5679114|gb|AAD46863.1|AF160923_1 BcDNA.LD10457 [Drosophila melanogaster] [NCBI NR]
  • gi|24665049|ref|NP_524103.2| signal sequence receptor beta [Drosophila melanogaster] [NCBI NR]
  • gi|23093371|gb|AAF49532.2| signal sequence receptor beta [Drosophila melanogaster] [NCBI NR]
  • The gene Signal sequence receptor Ã?&#142;Ã?² is referred to in FlyBase by the symbol Dmel\SsRÃ?&#142;Ã?² (CG5474, FBgn0011016). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is 3L:16122740..16124086. It has the cytological map location 72D9. Based on sequence similarity, it is predicted to have molecular function</span>: signal sequence binding. Based on sequence similarity, it is predicted to be involved in the biological process</span>: protein retention in ER lumen. 3 alleles are reported. No phenotypic data is available. It has one annotated transcript and one annotated polypeptide. [FlyBase]
  • >CG5474-PA translation from_gene[CG5474 SsRbeta FBgn0011016] seq_release:3 mol_weight=21207 cds_boundaries:(3L:16,078,788..16,079,579[+]) aa_length:190 transcript_info:[CG5474-RA seq_release:3] gene_info:[gene symbol:SsRbeta FBgn0011016 gene_boundaries [hmr_yeast5_DM3-1_pombe.fasta]
  • (AAF49532) CG5474-PA [DrosMelano7227.FASTAC.txt]
  • CG5474-PA [Drosophila melanogaster]gi|24665049|ref|NP_524103.2| CG5474-PA [Drosophila melanogaster]gi|5679114|gb|AAD46863.1| BcDNA.LD10457 [Drosophila melanogaster] [nrdb_11152004_Chlamydomonas]
  • type=protein; loc=3L:join(16123009..16123383,16123606..16123803); ID=FBpp0075209; name=SsRbeta-PA; parent=FBgn0011016,FBtr0075453; dbxref=FlyBase:FBpp0075209,FlyBase_Annotation_IDs:CG5474-PA,GB_protein:AAF49532.2,REFSEQ:NP_524103,GB_protein:AAF49532; MD5= [fly-100309-contam.fasta]
  • CG5474-PA [Drosophila melanogaster] [nr-271106-contam.fasta]
  • Signal sequence receptor beta CG5474-PA [Drosophila melanogaster] [nr-271106-contam.fasta]
  • BcDNA.LD10457 [Drosophila melanogaster] [nr-271106-contam.fasta]
  • type=protein; loc=3L:join(16123009..16123383,16123606..16123803); ID=FBpp0075209; name=SsRbeta-PA; parent=FBgn0011016,FBtr0075453; dbxref=FlyBase:FBpp0075209,FlyBase_Annotation_IDs:CG5474-PA,GB_protein:AAF49532.2,REFSEQ:NP_524103,GB_protein:AAF49532; MD5=69a934f5849f30f4841b8ea53654bf24; length=190; release=r5.16; species=Dmel; [fly-contam-His-TEV-Tub4complex.fasta]
  • type=protein; loc=3L:join(16123009..16123383,16123606..16123803); ID=FBpp0075209; name=SsRbeta-PA; parent=FBgn0011016,FBtr0075453; dbxref=FlyBase:FBpp0075209,FlyBase_Annotation_IDs:CG5474-PA,GB_protein:AAF49532.2,REFSEQ:NP_524103,GB_protein:AAF49532; MD5=69a934f5849f30f4841b8ea53654bf24; length=190; release=r5.21; species=Dmel; [Other_drosophila_na_09-09-2009_reversed.fasta]
  • BcDNA.LD10457 OS=Drosophila melanogaster GN=SsRbeta PE=1 SV=2 [UniProt_drosophila_07-01-2011_reversed.fasta]
  • type=protein; loc=3L:join(16123009..16123383,16123606..16123803); ID=FBpp0075209; name=SsRbeta-PA; parent=FBgn0011016,FBtr0075453; dbxref=FlyBase:FBpp0075209,FlyBase_Annotation_IDs:CG5474-PA,GB_protein:AAF49532.2,REFSEQ:NP_524103,GB_protein:AAF49532,FlyMine:FBpp0075209,modMine:FBpp0075209; MD5=69a934f5849f30f4841b8ea53654bf24; length=190; release=r5.46; species=Dmel; [fly-062812-sfps-sandra-contam.fasta]
  • BcDNA.LD10457 OS=Drosophila melanogaster GN=SsRbeta PE=2 SV=2 [UniProt_D_Melanogaster_07132012_07-13-2012_reversed.fasta]
  • type=protein; loc=3L:join(16129909..16130283,16130506..16130703); ID=FBpp0075209; name=SsRbeta-PA; parent=FBgn0011016,FBtr0075453; dbxref=FlyBase:FBpp0075209,FlyBase_Annotation_IDs:CG5474-PA,GB_protein:AAF49532.2,REFSEQ:NP_524103,GB_protein:AAF49532,FlyMine:FBpp0075209,modMine:FBpp0075209; MD5=69a934f5849f30f4841b8ea53654bf24; length=190; release=r6.02; species=Dmel; [fly-2014-05-contam.fasta]
  • type=protein; loc=3L:join(16129909..16130283,16130506..16130703); ID=FBpp0075209; name=SsRbeta-PA; parent=FBgn0011016,FBtr0075453; dbxref=FlyBase:FBpp0075209,FlyBase_Annotation_IDs:CG5474-PA,GB_protein:AAF49532.2,REFSEQ:NP_524103,GB_protein:AAF49532,FlyMine:FBpp0075209,modMine:FBpp0075209; MD5=69a934f5849f30f4841b8ea53654bf24; length=190; release=r6.07; species=Dmel; [fly-08202015-contam.fasta]
  • Translocon-associated protein subunit beta OS=Drosophila melanogaster GN=SsRbeta PE=1 SV=2 [DROME.fasta.20160308]
  • FBpp0075209 type=protein; loc=3L:join(16129909..16130283,16130506..16130703); ID=FBpp0075209; name=SsRbeta-PA; parent=FBgn0011016,FBtr0075453; dbxref=FlyBase:FBpp0075209,FlyBase_Annotation_IDs:CG5474-PA,GB_protein:AAF49532.2,REFSEQ:NP_524103,GB_protein:AAF49532,FlyMine:FBpp0075209,modMine:FBpp0075209; MD5=69a934f5849f30f4841b8ea53654bf24; length=190; release=r6.09; species=Dmel; [dmel-all-translation-r6.09.fasta]
  • [fly-122215-dmel-6-09-contam.fasta]
  • type=protein; loc=3L:join(16129909..16130283,16130506..16130703); ID=FBpp0075209; name=SsRbeta-PA; parent=FBgn0011016,FBtr0075453; dbxref=FlyBase:FBpp0075209,FlyBase_Annotation_IDs:CG5474-PA,GB_protein:AAF49532.2,REFSEQ:NP_524103,GB_protein:AAF49532,UniProt/TrEMBL:Q9VUZ0,FlyMine:FBpp0075209,modMine:FBpp0075209; MD5=69a934f5849f30f4841b8ea53654bf24; length=190; release=r6.14; species=Dmel; [fly-dmel-jan2017-sandracontam.fasta]
    • Organism: Drosophila melanogaster
    Length: 190 amino acids

    Gene Ontology:
    Cellular Component: lipid particle [IDA]
    integral to membrane [IEA]
    endoplasmic reticulum [IEA]
    signal recognition particle, endoplasmic reticulum targeting [ISS]
    Biological Process: protein retention in ER lumen [ISS]
    Molecular Function: signal sequence binding [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFKHLLTLFA LCAVFSTCLS EDETRARLLV SKQILNKYLV EKSDLLVRYT IFNVGSGAAT  60
   61 KVRLVDSGFH PEAFDVVGGQ PTAVVDRIAP QTNFTHVLVV RPKAFGYFNF TAAEVSYKAV 120
  121 EESETLQLAV SSEPGEGGIV NLNEYNKRFS SHFFDWVAFA VMTLPSLAIP LALWHQSKSK 180
  181 YERSGKNKKH

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data



    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
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