YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SsRbeta-PA
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.94
Topology Confidence:	0.89
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFKHLLTLFA LCAVFSTCLS EDETRARLLV SKQILNKYLV EKSDLLVRYT IFNVGSGAAT  60
   61 KVRLVDSGFH PEAFDVVGGQ PTAVVDRIAP QTNFTHVLVV RPKAFGYFNF TAAEVSYKAV 120
  121 EESETLQLAV SSEPGEGGIV NLNEYNKRFS SHFFDWVAFA VMTLPSLAIP LALWHQSKSK 180
  181 YERSGKNKKH

Type	Start	End	Confidence
Signal Peptide	1	20	0.99
N-region	1	11
H-region	12	17
C-region	18	20
Cleavage Site	20	21
Non-Cytoplasmic	21	155	0.99
Transmembrane Helix	156	174	0.92
Cytoplasmic	175	190	0.89