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Protein Overview: FBpp0312080, RpS...

General Information:
Name(s) found: FBpp0312080 [FlyBase]
RpS4-PB / FBpp0075619 [FlyBase]
RpS4-PA / FBpp0075618 [FlyBase]
Description(s) found:
Found 43 descriptions.
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  • type=protein; loc=3L:join(13035112..13035114,13035210..13035468,13035542..13035639,13036266..13036437,13036674..13036927); ID=FBpp0312080; name=RpS4-PC; parent=FBgn0011284,FBtr0346390; dbxref=FlyBase:FBpp0312080,FlyBase_Annotation_IDs:CG11276-PC; MD5=9432bd09df680f6871c732d2390f7b76; length=261; release=r5.56; species=Dmel; [FlyBase]
  • The gene Ribosomal protein S4 is referred to in FlyBase by the symbol Dmel\RpS4 (CG11276, FBgn0011284). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is 3L:13034856..13037012. It has the cytological map location 69F6. There is experimental evidence that it has the molecular function</span>: SUMO binding. There is experimental evidence that it is involved in the biological process</span>: mitotic spindle elongation; mitotic spindle organization. 3 alleles are reported. No phenotypic data is available. It has 2 annotated transcripts and 2 annotated polypeptides. [FlyBase]
  • The gene Ribosomal protein S4 is referred to in FlyBase by the symbol Dmel\RpS4 (CG11276, FBgn0011284). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is 3L:13034856..13037012. It has the cytological map location 69F6. There is experimental evidence that it has the molecular function</span>: SUMO binding. There is experimental evidence that it is involved in the biological process</span>: mitotic spindle elongation; mitotic spindle organization. 3 alleles are reported. No phenotypic data is available. It has 2 annotated transcripts and 2 annotated polypeptides. [FlyBase]
    • Organism: Drosophila melanogaster
    Length: 261 amino acids

    Gene Ontology:
    Cellular Component: lipid particle [IDA]
    cytosolic small ribosomal subunit [ISS][NAS]
    ribosome [NAS]
    Biological Process: mitotic spindle elongation [IMP]
    mitotic spindle organization [IMP]
    translation [ISS][NAS]
    Molecular Function: SUMO binding [IPI]
    RNA binding [IEA]
    structural constituent of ribosome [ISS][NAS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MARGPKKHLK RLAAPKAWML DKLGGVFAPR PSTGPHKLRE SLPLLIFLRN RLKYALNGAE  60
   61 VTKIVMQRLV KVDGKVRTDP TYPAGYMDVI TLEKTGEFFR LVYDVKGRFV IHRISAEEAK 120
  121 YKLCKVKKTQ LGAKGVPFLV THDGRTIRYP DPLIHANDSV QVDIASGKIT DYIKFDSGNL 180
  181 CMITGGRNLG RVGTVVNRER HPGSFDIVHI KDSQGHVFAT RLTNVFIIGK GNKPYISLPK 240
  241 GKGVKLSIAE ERDKRLAAKT H

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..67] MSA 2.046971 View MSA. No confident structure predictions are available.
    2 View Details [68..186] Pfam 42.408935 No description for PF00900.11 was found. Confident ab initio structure predictions are available.
    3 View Details [187..261] MSA 4.050992 View MSA. No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.95

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle