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Protein Overview: FBpp0312160, CG5...

General Information:
Name(s) found: FBpp0312160 [FlyBase]
CG5660-PA / FBpp0076287 [FlyBase]
Description(s) found:
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  • gi|7295018|gb|AAF50346.1| CG5660 [Drosophila melanogaster] [NCBI NR]
  • gi|21355675|ref|NP_648268.1| CG5660 [Drosophila melanogaster] [NCBI NR]
  • gi|20151733|gb|AAM11226.1| RE41093p [Drosophila melanogaster] [NCBI NR]
  • type=protein; loc=3L:complement(8954500..8954556,8954617..8955246,8955306..8955755,8955811..8957564,8957633..8957726); ID=FBpp0312160; name=CG5660-PB; parent=FBgn0035942,FBtr0346542; dbxref=FlyBase:FBpp0312160,FlyBase_Annotation_IDs:CG5660-PB; MD5=334fbdaf09d3feae92ef45b5350e28f0; length=994; release=r5.56; species=Dmel; [FlyBase]
  • This gene is referred to in FlyBase by the symbol Dmel\CG5660 (CG5660, FBgn0035942). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is 3L:8954375..8957763. It has the cytological map location 66E5. Based on sequence similarity, it is predicted to have molecular function</span>: valine-tRNA ligase activity. An electronic pipeline based on InterPro domains suggests that it is involved in the biological process</span>: valyl-tRNA aminoacylation. 3 alleles are reported. No phenotypic data is available. It has one annotated transcript and one annotated polypeptide. [FlyBase]
  • >CG5660-PA translation from_gene[CG5660 CG5660 FBgn0035942] seq_release:3 mol_weight=113099 cds_boundaries:(3L:8,920,113..8,923,336[-]) aa_length:994 transcript_info:[CG5660-RA seq_release:3] gene_info:[gene symbol:CG5660 FBgn0035942 gene_boundaries:(3 [hmr_yeast5_DM3-1_pombe.fasta]
  • (Q9VSR7) CG5660 protein (RE41093p) [DrosMelano7227.FASTAC.txt]
  • (AE003553) CG5660 gene product [Drosophila melanogaster] [yeastflysequest.fasta]
  • CG5660-PA [Drosophila melanogaster]gi|20151733|gb|AAM11226.1| RE41093p [Drosophila melanogaster]gi|21355675|ref|NP_648268.1| CG5660-PA [Drosophila melanogaster] [nrdb_11152004_Chlamydomonas]
  • type=protein; loc=3L:complement(8954500..8954556,8954617..8955246,8955306..8955755,8955811..8957564,8957633..8957726); ID=FBpp0076287; name=CG5660-PA; parent=FBgn0035942,FBtr0076560; dbxref=FlyBase:FBpp0076287,FlyBase_Annotation_IDs:CG5660-PA,GB_protein:A [fly-100309-contam.fasta]
  • RE41093p [Drosophila melanogaster] [nr-271106-contam.fasta]
  • CG5660-PA [Drosophila melanogaster] [nr-271106-contam.fasta]
  • type=protein; loc=3L:complement(8954500..8954556,8954617..8955246,8955306..8955755,8955811..8957564,8957633..8957726); ID=FBpp0076287; name=CG5660-PA; parent=FBgn0035942,FBtr0076560; dbxref=FlyBase:FBpp0076287,FlyBase_Annotation_IDs:CG5660-PA,GB_protein:AAF50346.1,REFSEQ:NP_648268,GB_protein:AAF50346; MD5=334fbdaf09d3feae92ef45b5350e28f0; length=994; release=r5.16; species=Dmel; [fly-contam-His-TEV-Tub4complex.fasta]
  • type=protein; loc=3L:complement(8954500..8954556,8954617..8955246,8955306..8955755,8955811..8957564,8957633..8957726); ID=FBpp0076287; name=CG5660-PA; parent=FBgn0035942,FBtr0076560; dbxref=FlyBase:FBpp0076287,FlyBase_Annotation_IDs:CG5660-PA,GB_protein:AAF50346.1,REFSEQ:NP_648268,GB_protein:AAF50346; MD5=334fbdaf09d3feae92ef45b5350e28f0; length=994; release=r5.21; species=Dmel; [Other_drosophila_na_09-09-2009_reversed.fasta]
  • CG5660 OS=Drosophila melanogaster GN=CG5660 PE=2 SV=1 [UniProt_drosophila_07-01-2011_reversed.fasta]
  • type=protein; loc=3L:complement(8954500..8954556,8954617..8955246,8955306..8955755,8955811..8957564,8957633..8957726); ID=FBpp0076287; name=CG5660-PA; parent=FBgn0035942,FBtr0076560; dbxref=FlyBase:FBpp0076287,FlyBase_Annotation_IDs:CG5660-PA,GB_protein:AAF50346.1,REFSEQ:NP_648268,GB_protein:AAF50346,FlyMine:FBpp0076287,modMine:FBpp0076287; MD5=334fbdaf09d3feae92ef45b5350e28f0; length=994; release=r5.46; species=Dmel; [fly-062812-sfps-sandra-contam.fasta]
  • type=protein; loc=3L:complement(join(8964533..8964626,8962711..8964464,8962206..8962655,8961517..8962146,8961400..8961456)); ID=FBpp0076287; name=CG5660-PA; parent=FBgn0035942,FBtr0076560; dbxref=FlyBase:FBpp0076287,FlyBase_Annotation_IDs:CG5660-PA,GB_protein:AAF50346.1,REFSEQ:NP_648268,GB_protein:AAF50346,FlyMine:FBpp0076287,modMine:FBpp0076287; MD5=334fbdaf09d3feae92ef45b5350e28f0; length=994; release=r6.02; species=Dmel; [fly-2014-05-contam.fasta]
  • type=protein; loc=3L:complement(join(8964533..8964626,8962711..8964464,8962206..8962655,8961517..8962146,8961400..8961456)); ID=FBpp0312160; name=CG5660-PB; parent=FBgn0035942,FBtr0346542; dbxref=FlyBase:FBpp0312160,FlyBase_Annotation_IDs:CG5660-PB,GB_protein:AHN58013,REFSEQ:NP_001286988; MD5=334fbdaf09d3feae92ef45b5350e28f0; length=994; release=r6.02; species=Dmel; [fly-2014-05-contam.fasta]
  • type=protein; loc=3L:complement(join(8964533..8964626,8962711..8964464,8962206..8962655,8961517..8962146,8961400..8961456)); ID=FBpp0076287; name=CG5660-PA; parent=FBgn0035942,FBtr0076560; dbxref=FlyBase:FBpp0076287,FlyBase_Annotation_IDs:CG5660-PA,GB_protein:AAF50346.1,REFSEQ:NP_648268,GB_protein:AAF50346,FlyMine:FBpp0076287,modMine:FBpp0076287; MD5=334fbdaf09d3feae92ef45b5350e28f0; length=994; release=r6.07; species=Dmel; [fly-08202015-contam.fasta]
  • type=protein; loc=3L:complement(join(8964533..8964626,8962711..8964464,8962206..8962655,8961517..8962146,8961400..8961456)); ID=FBpp0312160; name=CG5660-PB; parent=FBgn0035942,FBtr0346542; dbxref=FlyBase:FBpp0312160,FlyBase_Annotation_IDs:CG5660-PB,GB_protein:AHN58013,REFSEQ:NP_001286988; MD5=334fbdaf09d3feae92ef45b5350e28f0; length=994; release=r6.07; species=Dmel; [fly-08202015-contam.fasta]
  • CG5660, isoform A OS=Drosophila melanogaster GN=CG5660 PE=1 SV=1 [DROME.fasta.20160308]
  • FBpp0076287 type=protein; loc=3L:complement(join(8964533..8964626,8962711..8964464,8962206..8962655,8961517..8962146,8961400..8961456)); ID=FBpp0076287; name=CG5660-PA; parent=FBgn0035942,FBtr0076560; dbxref=FlyBase:FBpp0076287,FlyBase_Annotation_IDs:CG5660-PA,GB_protein:AAF50346.1,REFSEQ:NP_648268,GB_protein:AAF50346,FlyMine:FBpp0076287,modMine:FBpp0076287; MD5=334fbdaf09d3feae92ef45b5350e28f0; length=994; release=r6.09; species=Dmel; [dmel-all-translation-r6.09.fasta]
  • FBpp0312160 type=protein; loc=3L:complement(join(8964533..8964626,8962711..8964464,8962206..8962655,8961517..8962146,8961400..8961456)); ID=FBpp0312160; name=CG5660-PB; parent=FBgn0035942,FBtr0346542; dbxref=FlyBase:FBpp0312160,FlyBase_Annotation_IDs:CG5660-PB,GB_protein:AHN58013,REFSEQ:NP_001286988; MD5=334fbdaf09d3feae92ef45b5350e28f0; length=994; release=r6.09; species=Dmel; [dmel-all-translation-r6.09.fasta]
  • [fly-122215-dmel-6-09-contam.fasta]
  • type=protein; loc=3L:complement(join(8964533..8964626,8962711..8964464,8962206..8962655,8961517..8962146,8961400..8961456)); ID=FBpp0076287; name=ValRS-m-PA; parent=FBgn0035942,FBtr0076560; dbxref=FlyBase:FBpp0076287,FlyBase_Annotation_IDs:CG5660-PA,GB_protein:AAF50346.1,REFSEQ:NP_648268,GB_protein:AAF50346,UniProt/TrEMBL:Q9VSR7,FlyMine:FBpp0076287,modMine:FBpp0076287; MD5=334fbdaf09d3feae92ef45b5350e28f0; length=994; release=r6.14; species=Dmel; [fly-dmel-jan2017-sandracontam.fasta]
  • type=protein; loc=3L:complement(join(8964533..8964626,8962711..8964464,8962206..8962655,8961517..8962146,8961400..8961456)); ID=FBpp0312160; name=ValRS-m-PB; parent=FBgn0035942,FBtr0346542; dbxref=FlyBase:FBpp0312160,FlyBase_Annotation_IDs:CG5660-PB,GB_protein:AHN58013,REFSEQ:NP_001286988,UniProt/TrEMBL:Q9VSR7; MD5=334fbdaf09d3feae92ef45b5350e28f0; length=994; release=r6.14; species=Dmel; [fly-dmel-jan2017-sandracontam.fasta]
    • Organism: Drosophila melanogaster
    Length: 994 amino acids

    Gene Ontology:
    Cellular Component: cytoplasm [IEA]
    Biological Process: valyl-tRNA aminoacylation [IEA]
    Molecular Function: valine-tRNA ligase activity [ISS]
    ATP binding [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQIIGNCSSK LLRHKYLCQP RVYSLYYSTL KDAANELPLA AGYQPQPVEN AYWEREHRQA  60
   61 NLPKASASSC KRGTYRMLLP PPNVTGNLHL GHALMATVQD VIARQREQLG YQVDWVPGTD 120
  121 HAGIATQVVV ERTIAASQAK TRHELGRSAF LDEVWRWKAE KGAGIVQDLR QLGCKLNWQR 180
  181 EYFTMDEQQA HAVNVAFERL FEEGLIQRRN SVVNWCTALR SAISDIEVDS VEITEPVEIS 240
  241 VPGYDHKVLF GRMYDFAYHV VDGEALPDGS VEEIVVSTTR PETILGDVAV AVHPLDPRYA 300
  301 KYRNIDQVKL KHPFRDDTIP LVFDITVDQE FGTGAVKITP AHDKFDFELA TRHKLEPRQV 360
  361 FTETGLVVDA YSEYKGIPRF EARDLIVNRL EEMDLLRQVR SHTMQLPICS RSKDVIEYMI 420
  421 LPQWFLKCKD LAKDALSELH SGRLQILPPN FETEWERWLQ DSRDWCISRQ LWWGHQVPAY 480
  481 EVIDSQGNSQ WVAALDEKTA RQKAMRLIGS EEFTLKRDPD VLDTWFSSSL LPFSTAGWPE 540
  541 ESYKERYPLD IMQTGHDIIF FWVARMMMLG LKLTGEAPFQ RILLNGIVCD AHGRKMSKSI 600
  601 GNIVAPQQVV QGASLESLKA GLEQSCEAGI ITPSELKAST IGMTQMFPNG IQECGTDALR 660
  661 FTLMSHNIKS HFISFDVNAC HTNKLFLNKV WQAMRFTLGS AKGLGISLHQ FETLEGVNLG 720
  721 LWDRWIVGRL AETLSVCSQS YSNYNFHLAT AALKTFFYQY LCDTYLETTK PAIGNRSADA 780
  781 YIHVGTLTAC LSWGLQAMAP YAPFVASELL QHVPLNIELK LSDYKDEKLE EEVNEIVNIC 840
  841 HNVRQVKSRN EISKRHHPQL SLFAQNTDSE GVLRRHLPQI KVLSRCEDVE LELFDESSKI 900
  901 SKQLSYFSTA GALCSFGLKL SDGLDLTPEK RDEMQKANAK KLKKLVTELQ RYRMRLDNEA 960
  961 FQLMADKKVK SHFENKVKEL EAEINSLTRL AVLS

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data



    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.95

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle