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Protein Overview: mRpL23-PB, FBpp0...

General Information:
Name(s) found: FBpp0303833 [FlyBase]
FBpp0303832 [FlyBase]
mRpL23-PB / FBpp0288404 [FlyBase]
mRpL23-PA / FBpp0072778 [FlyBase]
Description(s) found:
Found 46 descriptions.
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  • type=protein; loc=3L:complement(2372909..2373067,2373129..2373422); ID=FBpp0303833; name=mRpL23-PD; parent=FBgn0035335,FBtr0331416; dbxref=FlyBase:FBpp0303833,FlyBase_Annotation_IDs:CG1320-PD,REFSEQ:NP_001261326,GB_protein:AGB94021; MD5=a6b47e3ddf01e89baf28f366f1ceb3b8; length=150; release=r5.56; species=Dmel; [FlyBase]
  • type=protein; loc=3L:complement(2372909..2373067,2373129..2373422); ID=FBpp0303832; name=mRpL23-PC; parent=FBgn0035335,FBtr0331415; dbxref=FlyBase:FBpp0303832,FlyBase_Annotation_IDs:CG1320-PC,REFSEQ:NP_001261325,GB_protein:AGB94020; MD5=a6b47e3ddf01e89baf28f366f1ceb3b8; length=150; release=r5.56; species=Dmel; [FlyBase]
  • The gene mitochondrial ribosomal protein L23 is referred to in FlyBase by the symbol Dmel\mRpL23 (CG1320, FBgn0035335). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is 3L:2372844..2373678. It has the cytological map location 62D7. Based on sequence similarity, it is predicted to have molecular function</span>: structural constituent of ribosome. Based on sequence similarity, it is predicted to be involved in the biological process</span>: translation. 5 alleles are reported. No phenotypic data is available. It has 2 annotated transcripts and 2 annotated polypeptides. [FlyBase]
  • The gene mitochondrial ribosomal protein L23 is referred to in FlyBase by the symbol Dmel\mRpL23 (CG1320, FBgn0035335). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is 3L:2372844..2373678. It has the cytological map location 62D7. Based on sequence similarity, it is predicted to have molecular function</span>: structural constituent of ribosome. Based on sequence similarity, it is predicted to be involved in the biological process</span>: translation. 5 alleles are reported. No phenotypic data is available. It has 2 annotated transcripts and 2 annotated polypeptides. [FlyBase]
    • Organism: Drosophila melanogaster
    Length: 150 amino acids

    Gene Ontology:
    Cellular Component: mitochondrial large ribosomal subunit [ISS]
    Biological Process: translation [ISS]
    Molecular Function: nucleotide binding [IEA]
    structural constituent of ribosome [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTRWYPIYQ RGNPQLRVFL PNFWMKLIRP TEEQPPNVVT FSVSMEMTKY DVRNYLEKIY  60
   61 KLPVVDVRTR IAMGETKKDQ TYGYITKKDD VKLAYVTLPR EESFVFPDFF SEKAEKQAKE 120
  121 EKSLDESKAG FRRFLDRNKK RPGTPGWFSI

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..150] PSI-BLAST 22.221849 50S subunit

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • structural constituent of ribosome
    		•  9.49719655437057 bayes_pls_golite062009
  • structural molecule activity
    		•  8.91971353502188 bayes_pls_golite062009
  • RNA binding
    		•  2.08123706428867 bayes_pls_golite062009
  • nucleic acid binding
    		•  1.05505904516672 bayes_pls_golite062009
  • binding
    		•  0.810197411226908 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle