YRC Public Data Repository - Protein Structure Prediction

Protein:	mRpL23-PB, FBpp0...
Organism:	Drosophila melanogaster
Length:	150 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for mRpL23-PB, FBpp0....

Description	E-value	Query Range	Subject Range
gi\|76613395 - gi\|76613395\|ref\|XP_871507.1\| PREDICTED: similar to 60S ribosomal protein L23a [Bos taurus]	147.0	[0..3]	[102..272]
gi\|46561792 - gi\|46561792\|gb\|AAT01114.1\| rpL23-SA fusion protein [rpL23-fusion expression vector pSA]	138.0	[0..15]	[148..8]
RM23_MOUSE - 39S ribosomal protein L23, mitochondrial OS=Mus musculus GN=Mrpl23 PE=1 SV=1	135.0	[0..1]	[150..1]
MRPL23 - mitochondrial ribosomal protein L23	133.0	[0..1]	[150..1]
RM23_RAT - 39S ribosomal protein L23, mitochondrial OS=Rattus norvegicus GN=Mrpl23 PE=2 SV=1	132.0	[0..1]	[150..1]
gi\|114635613 - gi\|114635613\|ref\|XP_508219.2\| PREDICTED: similar to ribosomal protein L23-related product [Pan trogl...	131.0	[0..6]	[150..39]
gi\|125980035, gi... - gi\|54641036\|gb\|EAL29787.1\| GA12114 [Drosophila pseudoobscura pseudoobscura], gi\|125980035\|ref\|XP_001... gi\|125980035\|ref... - GA12114-PA [Drosophila pseudoobscura], GA12114 [Drosophila pseudoobscura pseudoobscura]	128.0	[0..1]	[150..1]
gi\|50758228 - gi\|50758228\|ref\|XP_415820.1\| PREDICTED: similar to 60S ribosomal protein L23a [Gallus gallus]	127.0	[0..3]	[102..402]

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Predicted Domain #1

Region A:
Residues: [1-150]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTRWYPIYQ RGNPQLRVFL PNFWMKLIRP TEEQPPNVVT FSVSMEMTKY DVRNYLEKIY  60
   61 KLPVVDVRTR IAMGETKKDQ TYGYITKKDD VKLAYVTLPR EESFVFPDFF SEKAEKQAKE 120
  121 EKSLDESKAG FRRFLDRNKK RPGTPGWFSI

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	22.221849
Match:	1nkwR
Description:	50S subunit
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
structural constituent of ribosome	9.49719655437057	bayes_pls_golite062009
structural molecule activity	8.91971353502188	bayes_pls_golite062009
RNA binding	2.08123706428867	bayes_pls_golite062009
nucleic acid binding	1.05505904516672	bayes_pls_golite062009
binding	0.810197411226908	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: