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Protein Overview: Nop60B-PA, Nop60...

General Information:
Name(s) found: Nop60B-PF / FBpp0290083 [FlyBase]
Nop60B-PC / FBpp0289464 [FlyBase]
Nop60B-PB / FBpp0099583 [FlyBase]
Nop60B-PA / FBpp0072166 [FlyBase]
Description(s) found:
Found 71 descriptions.
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  • The gene Nucleolar protein at 60B is referred to in FlyBase by the symbol Dmel\Nop60B (CG3333, FBgn0259937). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is 2R:20062250..20073866. It has the cytological map location 60C1-60C2. Based on sequence similarity, it is predicted to have molecular function</span>: pseudouridylate synthase activity. There is experimental evidence that it is involved in the biological process</span>: ribosome biogenesis; germ cell development; rRNA processing; pseudouridine synthesis. 20 alleles are reported. The phenotypes of these alleles are annotated with: egg; hub cell; adult thorax; spermatocyte fusome; male germline stem cell; chaeta; testis; egg chamber; embryo. It has 6 annotated transcripts and 6 annotated polypeptides. [FlyBase]
  • The gene Nucleolar protein at 60B is referred to in FlyBase by the symbol Dmel\Nop60B (CG3333, FBgn0259937). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is 2R:20062250..20073866. It has the cytological map location 60C1-60C2. Based on sequence similarity, it is predicted to have molecular function</span>: pseudouridylate synthase activity. There is experimental evidence that it is involved in the biological process</span>: ribosome biogenesis; germ cell development; rRNA processing; pseudouridine synthesis. 20 alleles are reported. The phenotypes of these alleles are annotated with: egg; hub cell; adult thorax; spermatocyte fusome; male germline stem cell; chaeta; testis; egg chamber; embryo. It has 6 annotated transcripts and 6 annotated polypeptides. [FlyBase]
  • The gene Nucleolar protein at 60B is referred to in FlyBase by the symbol Dmel\Nop60B (CG3333, FBgn0259937). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is 2R:20062250..20073866. It has the cytological map location 60C1-60C2. Based on sequence similarity, it is predicted to have molecular function</span>: pseudouridylate synthase activity. There is experimental evidence that it is involved in the biological process</span>: ribosome biogenesis; germ cell development; rRNA processing; pseudouridine synthesis. 20 alleles are reported. The phenotypes of these alleles are annotated with: egg; hub cell; adult thorax; spermatocyte fusome; male germline stem cell; chaeta; testis; egg chamber; embryo. It has 6 annotated transcripts and 6 annotated polypeptides. [FlyBase]
  • The gene Nucleolar protein at 60B is referred to in FlyBase by the symbol Dmel\Nop60B (CG3333, FBgn0259937). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is 2R:20062250..20073866. It has the cytological map location 60C1-60C2. Based on sequence similarity, it is predicted to have molecular function</span>: pseudouridylate synthase activity. There is experimental evidence that it is involved in the biological process</span>: ribosome biogenesis; germ cell development; rRNA processing; pseudouridine synthesis. 20 alleles are reported. The phenotypes of these alleles are annotated with: egg; hub cell; adult thorax; spermatocyte fusome; male germline stem cell; chaeta; testis; egg chamber; embryo. It has 6 annotated transcripts and 6 annotated polypeptides. [FlyBase]
    • Organism: Drosophila melanogaster
    Length: 508 amino acids

    Gene Ontology:
    Cellular Component: nucleus [NAS]
    nucleolus [IDA][ISS][NAS]
    Biological Process: germ cell development [IMP]
    pseudouridine synthesis [IMP]
    ribosome biogenesis [IMP]
    rRNA processing [IMP][NAS]
    Molecular Function: RNA binding [IEA]
    pseudouridine synthase activity [IEA]
    pseudouridylate synthase activity [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADVEVRKEK KKKKIKEEPL DGDDIGTLQK QGNFQIKPSS KIAELDTSQW PLLLKNFDKL  60
   61 NIRSNHYTPL AHGSSPLNRD IKEYMKTGFI NLDKPSNPSS HEVVAWIKKI LKVEKTGHSG 120
  121 TLDPKVTGCL IVCIDRATRL VKSQQSAGKE YVAIFKLHGA VESVAKVRQG LEKLRGALFQ 180
  181 RPPLISAVKR QLRVRTVYDS KLLDYDETRN MGVFWVSCEA GSYIRTMCVH LGLVLGVGGQ 240
  241 MLELRRVRSG IQSERDGMVT MHDVLDAMWL YENHKDESML RRVIKPLEGL LVNHKRIIMK 300
  301 DSSVNAVCYG AKITLPGVLR YEDGIEIDQE IVICTTKGEA ICLAIALMTT ATMASCDHGV 360
  361 VAKIKRVIME RDTYPRKWGL GPKASAKKAL IAAGKLDKFG RPNENTPKEW LTGYVDYNAK 420
  421 KPAAQEVSPT NGSSEPSKRK LSTSSVEETA AAAVSEETPS KDKKKKKKKH KGDEEAPEAA 480
  481 EEEAEPVEKE KKKKKKKDKD RDRDEAQE

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..381] PSI-BLAST 98.30103 No description for 2ausC was found.
    2 View Details [382..508] FFAS03 1.22 Double layered 2D crystal structure of AQUAPORIN-4 (AQP4M23) at 3.2 a resolution by electron crystallography


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.90

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle