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Protein Overview: thoc5-PA

General Information:
Name(s) found: thoc5-PA / FBpp0072056 [FlyBase]
Description(s) found:
Found 23 descriptions.
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  • The gene thoc5 is referred to in FlyBase by the symbol Dmel\thoc5 (CG2980, FBgn0034939). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is 2R:19841616..19843930. It has the cytological map location 60A13. Its molecular function is unknown. It is reported to be involved in the biological process</span>: mRNA export from nucleus. 3 alleles are reported. No phenotypic data is available. It has one annotated transcript and one annotated polypeptide. [FlyBase]
    • Organism: Drosophila melanogaster
    Length: 616 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: mRNA export from nucleus [NAS]
    Molecular Function: molecular_function [ND]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 METILNTQFD QLQKAIEGIK EAKSKGQSTD EARIATTLMF VALKHANREV KHKIKAGRDK  60
   61 LHLEKCKVDL SRLQLQNLLY EVSHLKKEIV RCQKFKSRDT SLELLSEAEY SSELPDMPND 120
  121 AEELSSHKQH LHRLDCELRL RKALDKQYSA LLSSKQELLQ DNLSHAQRYV SFAPALRTLQ 180
  181 SATKPLHDAL QLSLDVEWKL SAVVKYLPKP LYVLFIVLQS LQRVSEEQSF TAEVVGYESE 240
  241 AQMQELLKEK KCSTLNYRQT KKESGDREKI ADKNNLDDSL APHPLHICLT IGAAGSNQLV 300
  301 LQIRYFDFIK CATVWGQLNC SRNANGQGDT NFVHHLLRHL YPNDLGNELP IPGIQYELRS 360
  361 SDLTAEECVR YLKAKDYGKP FCWLQSMCSI ATVNSSMLYK HELNLNKNNK EIIDRIARRL 420
  421 NSWQRLSQQI RGLTFKDIDL YSLQENIYPA GLSCSLVQWT AITHEELHSQ ISDALNSSSA 480
  481 DKGITYNSYR AVIVRGSAKM ECFIRIPSNY PLEMPLWILN VHWNGCLTAQ NNSAIKMMEF 540
  541 WTNSLQPKHL EPNDCILYAQ LFRTIYSFDI FLETEGSMQN TIEYNKEKPY ISAFAKRSRS 600
  601 RPYKYIKKGS VYAFKQ

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..338] PSI-BLAST 24.221849 Heavy meromyosin subfragment
    2 View Details [339..447] deduced N/A No confident structure predictions are available.
    3 View Details [448..616] MSA 1.015951 View MSA. No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle