YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: skpF-PA

General Information:
Name(s) found: skpF-PA / FBpp0071931 [FlyBase]
Description(s) found:
Found 23 descriptions.
SHOW ALL
  • The gene skpF is referred to in FlyBase by the symbol Dmel\skpF (CG12227, FBgn0034863). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is 2R:19345586..19346282. It has the cytological map location 59E1. Based on sequence similarity, it is predicted to have molecular function</span>: ubiquitin-protein ligase activity. An electronic pipeline based on InterPro domains suggests that it is involved in the biological process</span>: ubiquitin-dependent protein catabolic process. One allele is reported. No phenotypic data is available. It has one annotated transcript and one annotated polypeptide. [FlyBase]
    • Organism: Drosophila melanogaster
    Length: 171 amino acids

    Gene Ontology:
    Cellular Component: nuclear ubiquitin ligase complex [ISS]
    Biological Process: ubiquitin-dependent protein catabolic process [IEA]
    Molecular Function: ubiquitin-protein ligase activity [ISS]
    protein binding [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPVIKLQSSD GEIFETDIET AKCSSTIKTL LEDCPVEAEN DTLIPLPNVN STILKKVLIW  60
   61 AKHHREDIAE ENEEEAAKSV AVQITPWDAE FLSMDQGTLF ELILAANYLD IPNLLNAACM 120
  121 TVANMIKGRT TEEIRQTFHI TNDFSPSEED LMTMESEVPQ EDEAIEYGEI I

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..171] PSI-BLAST 65.154902 No description for 2e31B was found.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle