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Protein Overview: FBpp0309759, RpS...

General Information:
Name(s) found: FBpp0309759 [FlyBase]
RpS16-PA / FBpp0071766 [FlyBase]
Description(s) found:
Found 30 descriptions.
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  • type=protein; loc=2R:join(18493663..18493674,18493752..18493793,18494014..18494145,18494439..18494553,18495260..18495405); ID=FBpp0309759; name=RpS16-PB; parent=FBgn0034743,FBtr0343002; dbxref=FlyBase:FBpp0309759,FlyBase_Annotation_IDs:CG4046-PB; MD5=e7f0408a4696f9329449eb7f556de5eb; length=148; release=r5.56; species=Dmel; [FlyBase]
  • The gene Ribosomal protein S16 is referred to in FlyBase by the symbol Dmel\RpS16 (CG4046, FBgn0034743). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is 2R:18493626..18495506. It has the cytological map location 58F1. There is experimental evidence that it has the molecular function</span>: SUMO binding. There is experimental evidence that it is involved in the biological process</span>: mitotic spindle elongation; mitotic spindle organization. 2 alleles are reported. No phenotypic data is available. It has one annotated transcript and one annotated polypeptide. [FlyBase]
    • Organism: Drosophila melanogaster
    Length: 148 amino acids

    Gene Ontology:
    Cellular Component: lipid particle [IDA]
    cytosolic small ribosomal subunit [ISS]
    Biological Process: mitotic spindle elongation [IMP]
    mitotic spindle organization [IMP]
    translation [ISS]
    Molecular Function: SUMO binding [IPI]
    structural constituent of ribosome [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQQKRREPVQ AVQVFGRKKT ATAVAYCKRG NGLLKVNGRP LEQIEPKVLQ YKLQEPLLLL  60
   61 GKEKFAGVDI RVRVSGGGHV AQIYAIRQAI SKALVAFYQK YVDEASKKEI KDILVQYDRT 120
  121 LLVGDPRRCE PKKFGGPGAR ARYQKSYR

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..148] PSI-BLAST 49.154902 Structure of the ribosomal 80S-eEF2-sordarin complex from yeast obtained by docking atomic models for RNA and protein components into a 11.7 A cryo-EM map. This file, 1S1H, Contains 40S subunit. The 60S Ribosomal Subunit Is In File 1S1I.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle