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Protein Overview: CG9346-PA

General Information:
Name(s) found: CG9346-PA / FBpp0071455 [FlyBase]
Description(s) found:
Found 19 descriptions.
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  • This gene is referred to in FlyBase by the symbol Dmel\CG9346 (CG9346, FBgn0034572). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is 2R:16899477..16903133. It has the cytological map location 57B9. Based on sequence similarity, it is predicted to have molecular function</span>: mRNA binding. An electronic pipeline based on InterPro domains suggests that it is involved in the biological process</span>: RNA processing. One allele is reported. No phenotypic data is available. It has one annotated transcript and one annotated polypeptide. [FlyBase]
    • Organism: Drosophila melanogaster
    Length: 957 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: RNA processing [IEA]
    Molecular Function: nucleotide binding [IEA]
    RNA binding [IEA]
    mRNA binding [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKQGNKSKD SAAASATLKR ISEKKLEAFT VGTFSKRQLS KKELEDQKKK EDAAAAAHAF  60
   61 KEFVETFQDA PTPSSKVWVK AGTYDAGSRR EDKSEKGKLY KPVSKLMEKS SSDKVEDYAK 120
  121 TLASDLKKDS GPLKKKNQEK KKSNLELFKE ELRQIQEERE ERHKYKHMAS SHSAPAQQPA 180
  181 ASAAPVPSSS VSTTSQNSSS SKESGSFDTG DPNTTNLYLG NLNPKISEQQ LMEIFGRYGP 240
  241 LASIKIMWPR SEEEKQRGRN CGFVAYMSRK DAERALKTLN GRYIMGYEMR LGWGKTVPIM 300
  301 NTPIFTPQAL LEMTLPPPPS GLPFNAQPPP SEADVLPKKN YKEFNQEDKE NMERILAKCV 360
  361 VKVHIPTEKA VLNVIHRMIE FVIREGPMFE ALIMIREMEN PLFAFLFDNE SPAHIYYRWK 420
  421 LFSLLQGDTP NEWREEEFRM FKNGPVWKPP IANFYTQGMP DELVVDPDAP VVHKGALSNA 480
  481 QRNRLEDLIR HLTPERARIG DAMIFCIEHA DAADEICECI AESLSNINTL ASKKIARLYL 540
  541 ISDILHNCTV KVANASFFRK SVEKQLLDIF DNLHNYYLNI ESRLKAEGFK SRVCNVIRTW 600
  601 EEWTIYPKDF MAQLTAKFLG KPYVKPVNNS PQAEETRFDE ALDEDIDGAP LSGEEKDDED 660
  661 LDGVPLDGAA LLKSALKRAI PDADAGTPKR DTPKKDEYLD EIDGIPLDDD LDGVPLEKET 720
  721 KSTAKLPGFI PSKWETVDPQ QVEAQAITTS KWDTLDPPDP PKFFSSDDDS GEDNPQKYTD 780
  781 EMRQKLRDIE SKAIQYQDEL ESGKRRLEPG WSVPEQVEQF RKRLLKQDSR SEATVDSPLS 840
  841 YMHIKSKSSK VSESPALFRS SSRKRSHSPF SGGESKRRDY SPETSRSSKS SKRNRSRSPS 900
  901 SSPKRYTERS SRSSRYETPA SGSSRSRSSP TSSRSSRREE PSPPRHRSDK HKHKHRH

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..299] PSI-BLAST 19.0 No description for 2ghpA was found.
    2 View Details [300..476] PSI-BLAST 3.522879 Sec24
    3 View Details [477..625] PSI-BLAST 13.09691 No description for 2diwA was found.
    4 View Details [626..753] deduced N/A No confident structure predictions are available.
    5 View Details [754..957] MSA 7.132994 View MSA. No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  0.950788308762215 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.29562225149076 bayes_pls_golite062009
    2 No functions predicted.
    3 No functions predicted.
    4 No functions predicted.
    5 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.98

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle