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Protein Overview: Obp57c-PA

General Information:
Name(s) found: Obp57c-PA / FBpp0085604 [FlyBase]
Description(s) found:
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  • gi|7302379|gb|AAF57467.1| Odorant-binding protein 57c, isoform A [Drosophila melanogaster] [NCBI NR]
  • gi|66772859|gb|AAY55740.1| IP02257p [Drosophila melanogaster] [NCBI NR]
  • gi|60390655|sp|Q9V931.1|OB57C_DROME RecName: Full=General odorant-binding protein 57c; Flags: Precursor [NCBI NR]
  • gi|19922636|ref|NP_611481.1| Odorant-binding protein 57c, isoform A [Drosophila melanogaster] [NCBI NR]
  • gi|18447622|gb|AAL68372.1| RH68952p [Drosophila melanogaster] [NCBI NR]
  • gi|161077276|ref|NP_001097384.1| Odorant-binding protein 57c, isoform B [Drosophila melanogaster] [NCBI NR]
  • gi|157400414|gb|ABV53859.1| Odorant-binding protein 57c, isoform B [Drosophila melanogaster] [NCBI NR]
  • General odorant-binding protein 57c OS=Drosophila melanogaster GN=Obp57c PE=2 SV=1 [Swiss-Prot]
  • The gene Odorant-binding protein 57c is referred to in FlyBase by the symbol Dmel\Obp57c (CG13421, FBgn0034509). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is 2R:16391061..16392296. It has the cytological map location 57A4. Based on sequence similarity, it is predicted to have molecular function</span>: odorant binding. Based on sequence similarity, it is predicted to be involved in the biological process</span>: sensory perception of chemical stimulus. One allele is reported. No phenotypic data is available. It has 2 annotated transcripts and 2 annotated polypeptides. [FlyBase]
  • >CG13421-PA translation from_gene[CG13421 Obp57c FBgn0034509] seq_release:3 mol_weight=17223 cds_boundaries:(2R:15,567,379..15,567,887[+]) aa_length:149 transcript_info:[CG13421-RA seq_release:3] gene_info:[gene symbol:Obp57c FBgn0034509 gene_boundarie [hmr_yeast5_DM3-1_pombe.fasta]
  • (Q9V931) CG13421 protein (RH68952p) [DrosMelano7227.FASTAC.txt]
  • (AE003792) CG13421 gene product [Drosophila melanogaster] [yeastflysequest.fasta]
  • CG13421-PA [Drosophila melanogaster]gi|18447622|gb|AAL68372.1| RH68952p [Drosophila melanogaster]gi|19922636|ref|NP_611481.1| CG13421-PA [Drosophila melanogaster] [nrdb_11152004_Chlamydomonas]
  • type=protein; loc=2R:join(16391172..16391225,16391288..16391683); ID=FBpp0085604; name=Obp57c-PA; parent=FBgn0034509,FBtr0086292; dbxref=FlyBase:FBpp0085604,FlyBase_Annotation_IDs:CG13421-PA,GB_protein:AAF57467.1,REFSEQ:NP_611481,GB_protein:AAF57467; MD5= [fly-100309-contam.fasta]
  • type=protein; loc=2R:join(16391172..16391225,16391288..16391683); ID=FBpp0112012; name=Obp57c-PB; parent=FBgn0034509,FBtr0113099; dbxref=FlyBase:FBpp0112012,FlyBase_Annotation_IDs:CG13421-PB,REFSEQ:NP_001097384,GB_protein:ABV53859; MD5=58543ec4783a9b2b1f1 [fly-100309-contam.fasta]
  • CG13421-PA [Drosophila melanogaster] [nr-271106-contam.fasta]
  • General odorant-binding protein 57c precursor [nr-271106-contam.fasta]
  • IP02257p [Drosophila melanogaster] [nr-271106-contam.fasta]
  • RH68952p [Drosophila melanogaster] [nr-271106-contam.fasta]
  • Odorant-binding protein 57c CG13421-PA [Drosophila melanogaster] [nr-271106-contam.fasta]
  • type=protein; loc=2R:join(16391172..16391225,16391288..16391683); ID=FBpp0085604; name=Obp57c-PA; parent=FBgn0034509,FBtr0086292; dbxref=FlyBase:FBpp0085604,FlyBase_Annotation_IDs:CG13421-PA,GB_protein:AAF57467.1,REFSEQ:NP_611481,GB_protein:AAF57467; MD5=58543ec4783a9b2b1f1987ec5dacdb59; length=149; release=r5.16; species=Dmel; [fly-contam-His-TEV-Tub4complex.fasta]
  • type=protein; loc=2R:join(16391172..16391225,16391288..16391683); ID=FBpp0112012; name=Obp57c-PB; parent=FBgn0034509,FBtr0113099; dbxref=FlyBase:FBpp0112012,FlyBase_Annotation_IDs:CG13421-PB,REFSEQ:NP_001097384,GB_protein:ABV53859; MD5=58543ec4783a9b2b1f1987ec5dacdb59; length=149; release=r5.16; species=Dmel; [fly-contam-His-TEV-Tub4complex.fasta]
  • type=protein; loc=2R:join(16391172..16391225,16391288..16391683); ID=FBpp0085604; name=Obp57c-PA; parent=FBgn0034509,FBtr0086292; dbxref=FlyBase:FBpp0085604,FlyBase_Annotation_IDs:CG13421-PA,GB_protein:AAF57467.1,REFSEQ:NP_611481,GB_protein:AAF57467; MD5=58543ec4783a9b2b1f1987ec5dacdb59; length=149; release=r5.21; species=Dmel; [Other_drosophila_na_09-09-2009_reversed.fasta]
  • type=protein; loc=2R:join(16391172..16391225,16391288..16391683); ID=FBpp0112012; name=Obp57c-PB; parent=FBgn0034509,FBtr0113099; dbxref=FlyBase:FBpp0112012,FlyBase_Annotation_IDs:CG13421-PB,REFSEQ:NP_001097384,GB_protein:ABV53859; MD5=58543ec4783a9b2b1f1987ec5dacdb59; length=149; release=r5.21; species=Dmel; [Other_drosophila_na_09-09-2009_reversed.fasta]
  • type=protein; loc=2R:join(16391172..16391225,16391288..16391683); ID=FBpp0085604; name=Obp57c-PA; parent=FBgn0034509,FBtr0086292; dbxref=FlyBase:FBpp0085604,FlyBase_Annotation_IDs:CG13421-PA,GB_protein:AAF57467.1,REFSEQ:NP_611481,GB_protein:AAF57467,FlyMine:FBpp0085604,modMine:FBpp0085604; MD5=58543ec4783a9b2b1f1987ec5dacdb59; length=149; release=r5.46; species=Dmel; [fly-062812-sfps-sandra-contam.fasta]
  • type=protein; loc=2R:join(16391172..16391225,16391288..16391683); ID=FBpp0112012; name=Obp57c-PB; parent=FBgn0034509,FBtr0113099; dbxref=FlyBase:FBpp0112012,FlyBase_Annotation_IDs:CG13421-PB,REFSEQ:NP_001097384,GB_protein:ABV53859; MD5=58543ec4783a9b2b1f1987ec5dacdb59; length=149; release=r5.46; species=Dmel; [fly-062812-sfps-sandra-contam.fasta]
  • type=protein; loc=2R:join(20503667..20503720,20503783..20504178); ID=FBpp0085604; name=Obp57c-PA; parent=FBgn0034509,FBtr0086292; dbxref=FlyBase:FBpp0085604,FlyBase_Annotation_IDs:CG13421-PA,GB_protein:AAF57467.1,REFSEQ:NP_611481,GB_protein:AAF57467,FlyMine:FBpp0085604,modMine:FBpp0085604; MD5=58543ec4783a9b2b1f1987ec5dacdb59; length=149; release=r6.02; species=Dmel; [fly-2014-05-contam.fasta]
  • type=protein; loc=2R:join(20503667..20503720,20503783..20504178); ID=FBpp0085604; name=Obp57c-PA; parent=FBgn0034509,FBtr0086292; dbxref=FlyBase:FBpp0085604,FlyBase_Annotation_IDs:CG13421-PA,GB_protein:AAF57467.1,REFSEQ:NP_611481,GB_protein:AAF57467,FlyMine:FBpp0085604,modMine:FBpp0085604; MD5=58543ec4783a9b2b1f1987ec5dacdb59; length=149; release=r6.07; species=Dmel; [fly-08202015-contam.fasta]
  • FBpp0085604 type=protein; loc=2R:join(20503667..20503720,20503783..20504178); ID=FBpp0085604; name=Obp57c-PA; parent=FBgn0034509,FBtr0086292; dbxref=FlyBase:FBpp0085604,FlyBase_Annotation_IDs:CG13421-PA,GB_protein:AAF57467.1,REFSEQ:NP_611481,GB_protein:AAF57467,FlyMine:FBpp0085604,modMine:FBpp0085604; MD5=58543ec4783a9b2b1f1987ec5dacdb59; length=149; release=r6.09; species=Dmel; [dmel-all-translation-r6.09.fasta]
  • [fly-122215-dmel-6-09-contam.fasta]
  • type=protein; loc=2R:join(20503667..20503720,20503783..20504178); ID=FBpp0085604; name=Obp57c-PA; parent=FBgn0034509,FBtr0086292; dbxref=FlyBase:FBpp0085604,FlyBase_Annotation_IDs:CG13421-PA,GB_protein:AAF57467.1,REFSEQ:NP_611481,GB_protein:AAF57467,UniProt/Swiss-Prot:Q9V931,FlyMine:FBpp0085604,modMine:FBpp0085604; MD5=58543ec4783a9b2b1f1987ec5dacdb59; length=149; release=r6.14; species=Dmel; [fly-dmel-jan2017-sandracontam.fasta]
    • Organism: Drosophila melanogaster
    Length: 149 amino acids

    Gene Ontology:
    Cellular Component: cellular_component [ND]
    Biological Process: sensory perception of chemical stimulus [UNKNOWN][ISS]
    transport [IEA]
    Molecular Function: odorant binding [UNKNOWN][ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLKLWLICIL TVSVVSIQSL SLLEETNYVS DCLASNNISQ AEFQELIDRN SSEEDDLENT  60
   61 DRRYKCFIHC LAEKGNLLDT NGYLDVDKID QIEPVSDELR EILYDCKKIY DEEEDHCEYA 120
  121 FKMVTCLTES FEQSDEVTEA GKNTNKLNE

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..149] PSI-BLAST 30.154902 Solution structure of Antheraea polyphemus pheromone binding protein (ApolPBP)

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • odorant binding
    		•  5.10678105646998 bayes_pls_golite062009
  • pheromone binding
    		•  3.21844632676625 bayes_pls_golite062009
  • binding
    		•  1.84061726818261 bayes_pls_golite062009
  • phenylalkylamine binding
    		•  1.79379891126325 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
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