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Protein Overview: RpS18-PA, RpS18-PB

General Information:
Name(s) found: RpS18-PA / FBpp0085586 [FlyBase]
RpS18-PB / FBpp0085585 [FlyBase]
Description(s) found:
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  • gi|90855595|gb|ABE01159.1| IP16603p [Drosophila melanogaster] [NCBI NR]
  • gi|730637|sp|P41094.1|RS18_DROME RecName: Full=40S ribosomal protein S18 [NCBI NR]
  • gi|7302403|gb|AAF57491.1| ribosomal protein S18, isoform A [Drosophila melanogaster] [NCBI NR]
  • gi|349256|gb|AAA28870.1| ribosomal protein S18 [NCBI NR]
  • gi|24656100|ref|NP_725943.1| ribosomal protein S18, isoform B [Drosophila melanogaster] [NCBI NR]
  • gi|21626903|gb|AAM68401.1| ribosomal protein S18, isoform B [Drosophila melanogaster] [NCBI NR]
  • gi|17136882|ref|NP_476964.1| ribosomal protein S18, isoform A [Drosophila melanogaster] [NCBI NR]
  • 40S ribosomal protein S18 OS=Drosophila melanogaster GN=RpS18 PE=1 SV=1 [Swiss-Prot]
  • The gene Ribosomal protein S18 is referred to in FlyBase by the symbol Dmel\RpS18 (CG8900, FBgn0010411). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is 2R:16151477..16152399. It has the cytological map location 56F11. Based on sequence similarity, it is predicted to have molecular function</span>: structural constituent of ribosome. There is experimental evidence that it is involved in the biological process</span>: mitotic spindle elongation; mitotic spindle organization. 3 alleles are reported. No phenotypic data is available. It has 2 annotated transcripts and 2 annotated polypeptides. [FlyBase]
  • >CG8900-PA translation from_gene[CG8900 RpS18 FBgn0010411] seq_release:3 mol_weight=17612 cds_boundaries:(2R:15,327,820..15,328,471[+]) aa_length:152 transcript_info:[CG8900-RA seq_release:3] gene_info:[gene symbol:RpS18 FBgn0010411 gene_boundaries:(2R [hmr_yeast5_DM3-1_pombe.fasta]
  • >CG8900-PB translation from_gene[CG8900 RpS18 FBgn0010411] seq_release:3 mol_weight=17612 cds_boundaries:(2R:15,327,820..15,328,471[+]) aa_length:152 transcript_info:[CG8900-RB seq_release:3] gene_info:[gene symbol:RpS18 FBgn0010411 gene_boundaries:(2R [hmr_yeast5_DM3-1_pombe.fasta]
  • (P41094) 40S ribosomal protein S18 [DrosMelano7227.FASTAC.txt]
  • (AE003792) RpS18 gene product [Drosophila melanogaster] [yeastflysequest.fasta]
  • similar to Drosophila melanogaster RpS18 [Drosophila yakuba]gi|38047723|gb|AAR09764.1| similar to Drosophila melanogaster RpS18 [Drosophila yakuba]gi|21626903|gb|AAM68401.1| CG8900-PB, isoform B [Drosophila melanogaster]gi|7302403|gb|AAF57491.1| CG8900 [nrdb_11152004_Chlamydomonas]
  • type=protein; loc=2R:join(16151613..16151615,16151752..16151937,16151998..16152267); ID=FBpp0085585; name=RpS18-PB; parent=FBgn0010411,FBtr0086273; dbxref=FlyBase:FBpp0085585,FlyBase_Annotation_IDs:CG8900-PB,GB_protein:AAM68401.1,REFSEQ:NP_725943,GB_prote [fly-100309-contam.fasta]
  • type=protein; loc=2R:join(16151613..16151615,16151752..16151937,16151998..16152267); ID=FBpp0085586; name=RpS18-PA; parent=FBgn0010411,FBtr0086274; dbxref=FlyBase:FBpp0085586,FlyBase_Annotation_IDs:CG8900-PA,GB_protein:AAF57491.1,REFSEQ:NP_476964,GB_prote [fly-100309-contam.fasta]
  • Ribosomal protein S18 CG8900-PB, isoform B [Drosophila melanogaster] [nr-271106-contam.fasta]
  • CG8900-PA, isoform A [Drosophila melanogaster] [nr-271106-contam.fasta]
  • ribosomal protein S18 [nr-271106-contam.fasta]
  • CG8900-PB, isoform B [Drosophila melanogaster] [nr-271106-contam.fasta]
  • Ribosomal protein S18 CG8900-PA, isoform A [Drosophila melanogaster] [nr-271106-contam.fasta]
  • 40S ribosomal protein S18 [nr-271106-contam.fasta]
  • IP16603p [Drosophila melanogaster] [nr-271106-contam.fasta]
  • type=protein; loc=2R:join(16151613..16151615,16151752..16151937,16151998..16152267); ID=FBpp0085585; name=RpS18-PB; parent=FBgn0010411,FBtr0086273; dbxref=FlyBase:FBpp0085585,FlyBase_Annotation_IDs:CG8900-PB,GB_protein:AAM68401.1,REFSEQ:NP_725943,GB_protein:AAM68401; MD5=97ba9ef101737c9989d87e4dd680b173; length=152; release=r5.16; species=Dmel; [fly-contam-His-TEV-Tub4complex.fasta]
  • type=protein; loc=2R:join(16151613..16151615,16151752..16151937,16151998..16152267); ID=FBpp0085586; name=RpS18-PA; parent=FBgn0010411,FBtr0086274; dbxref=FlyBase:FBpp0085586,FlyBase_Annotation_IDs:CG8900-PA,GB_protein:AAF57491.1,REFSEQ:NP_476964,GB_protein:AAF57491; MD5=97ba9ef101737c9989d87e4dd680b173; length=152; release=r5.16; species=Dmel; [fly-contam-His-TEV-Tub4complex.fasta]
  • type=protein; loc=2R:join(16151613..16151615,16151752..16151937,16151998..16152267); ID=FBpp0085585; name=RpS18-PB; parent=FBgn0010411,FBtr0086273; dbxref=FlyBase:FBpp0085585,FlyBase_Annotation_IDs:CG8900-PB,GB_protein:AAM68401.1,REFSEQ:NP_725943,GB_protein:AAM68401; MD5=97ba9ef101737c9989d87e4dd680b173; length=152; release=r5.21; species=Dmel; [Other_drosophila_na_09-09-2009_reversed.fasta]
  • type=protein; loc=2R:join(16151613..16151615,16151752..16151937,16151998..16152267); ID=FBpp0085586; name=RpS18-PA; parent=FBgn0010411,FBtr0086274; dbxref=FlyBase:FBpp0085586,FlyBase_Annotation_IDs:CG8900-PA,GB_protein:AAF57491.1,REFSEQ:NP_476964,GB_protein:AAF57491; MD5=97ba9ef101737c9989d87e4dd680b173; length=152; release=r5.21; species=Dmel; [Other_drosophila_na_09-09-2009_reversed.fasta]
  • type=protein; loc=2R:join(16151613..16151615,16151752..16151937,16151998..16152267); ID=FBpp0085585; name=RpS18-PB; parent=FBgn0010411,FBtr0086273; dbxref=FlyBase:FBpp0085585,FlyBase_Annotation_IDs:CG8900-PB,GB_protein:AAM68401.1,REFSEQ:NP_725943,GB_protein:AAM68401; MD5=97ba9ef101737c9989d87e4dd680b173; length=152; release=r5.46; species=Dmel; [fly-062812-sfps-sandra-contam.fasta]
  • type=protein; loc=2R:join(16151613..16151615,16151752..16151937,16151998..16152267); ID=FBpp0085586; name=RpS18-PA; parent=FBgn0010411,FBtr0086274; dbxref=FlyBase:FBpp0085586,FlyBase_Annotation_IDs:CG8900-PA,GB_protein:AAF57491.1,REFSEQ:NP_476964,GB_protein:AAF57491,FlyMine:FBpp0085586,modMine:FBpp0085586; MD5=97ba9ef101737c9989d87e4dd680b173; length=152; release=r5.46; species=Dmel; [fly-062812-sfps-sandra-contam.fasta]
  • ribosomal protein S18, isoform B [Drosophila melanogaster] [2012-10-yates-His-Tub4-plus-reversed.fasta]
  • type=protein; loc=2R:join(20264108..20264110,20264247..20264432,20264493..20264762); ID=FBpp0085585; name=RpS18-PB; parent=FBgn0010411,FBtr0086273; dbxref=FlyBase:FBpp0085585,FlyBase_Annotation_IDs:CG8900-PB,GB_protein:AAM68401.1,REFSEQ:NP_725943,GB_protein:AAM68401; MD5=97ba9ef101737c9989d87e4dd680b173; length=152; release=r6.02; species=Dmel; [fly-2014-05-contam.fasta]
  • type=protein; loc=2R:join(20264108..20264110,20264247..20264432,20264493..20264762); ID=FBpp0085586; name=RpS18-PA; parent=FBgn0010411,FBtr0086274; dbxref=FlyBase:FBpp0085586,FlyBase_Annotation_IDs:CG8900-PA,GB_protein:AAF57491.1,REFSEQ:NP_476964,GB_protein:AAF57491,FlyMine:FBpp0085586,modMine:FBpp0085586; MD5=97ba9ef101737c9989d87e4dd680b173; length=152; release=r6.02; species=Dmel; [fly-2014-05-contam.fasta]
  • type=protein; loc=2R:join(20264108..20264110,20264247..20264432,20264493..20264762); ID=FBpp0085585; name=RpS18-PB; parent=FBgn0010411,FBtr0086273; dbxref=FlyBase:FBpp0085585,FlyBase_Annotation_IDs:CG8900-PB,GB_protein:AAM68401.1,REFSEQ:NP_725943,GB_protein:AAM68401; MD5=97ba9ef101737c9989d87e4dd680b173; length=152; release=r6.07; species=Dmel; [fly-08202015-contam.fasta]
  • type=protein; loc=2R:join(20264108..20264110,20264247..20264432,20264493..20264762); ID=FBpp0085586; name=RpS18-PA; parent=FBgn0010411,FBtr0086274; dbxref=FlyBase:FBpp0085586,FlyBase_Annotation_IDs:CG8900-PA,GB_protein:AAF57491.1,REFSEQ:NP_476964,GB_protein:AAF57491,FlyMine:FBpp0085586,modMine:FBpp0085586; MD5=97ba9ef101737c9989d87e4dd680b173; length=152; release=r6.07; species=Dmel; [fly-08202015-contam.fasta]
  • FBpp0085585 type=protein; loc=2R:join(20264108..20264110,20264247..20264432,20264493..20264762); ID=FBpp0085585; name=RpS18-PB; parent=FBgn0010411,FBtr0086273; dbxref=FlyBase:FBpp0085585,FlyBase_Annotation_IDs:CG8900-PB,GB_protein:AAM68401.1,REFSEQ:NP_725943,GB_protein:AAM68401; MD5=97ba9ef101737c9989d87e4dd680b173; length=152; release=r6.09; species=Dmel; [dmel-all-translation-r6.09.fasta]
  • FBpp0085586 type=protein; loc=2R:join(20264108..20264110,20264247..20264432,20264493..20264762); ID=FBpp0085586; name=RpS18-PA; parent=FBgn0010411,FBtr0086274; dbxref=FlyBase:FBpp0085586,FlyBase_Annotation_IDs:CG8900-PA,GB_protein:AAF57491.1,REFSEQ:NP_476964,GB_protein:AAF57491,FlyMine:FBpp0085586,modMine:FBpp0085586; MD5=97ba9ef101737c9989d87e4dd680b173; length=152; release=r6.09; species=Dmel; [dmel-all-translation-r6.09.fasta]
  • [fly-122215-dmel-6-09-contam.fasta]
  • type=protein; loc=2R:join(20264108..20264110,20264247..20264432,20264493..20264762); ID=FBpp0085585; name=RpS18-PB; parent=FBgn0010411,FBtr0086273; dbxref=FlyBase:FBpp0085585,FlyBase_Annotation_IDs:CG8900-PB,GB_protein:AAM68401.1,REFSEQ:NP_725943,GB_protein:AAM68401,UniProt/Swiss-Prot:P41094; MD5=97ba9ef101737c9989d87e4dd680b173; length=152; release=r6.14; species=Dmel; [fly-dmel-jan2017-sandracontam.fasta]
  • type=protein; loc=2R:join(20264108..20264110,20264247..20264432,20264493..20264762); ID=FBpp0085586; name=RpS18-PA; parent=FBgn0010411,FBtr0086274; dbxref=FlyBase:FBpp0085586,FlyBase_Annotation_IDs:CG8900-PA,GB_protein:AAF57491.1,REFSEQ:NP_476964,GB_protein:AAF57491,UniProt/Swiss-Prot:P41094,FlyMine:FBpp0085586,modMine:FBpp0085586; MD5=97ba9ef101737c9989d87e4dd680b173; length=152; release=r6.14; species=Dmel; [fly-dmel-jan2017-sandracontam.fasta]
    • Organism: Drosophila melanogaster
    Length: 152 amino acids

    Gene Ontology:
    Cellular Component: lipid particle [IDA]
    cytosolic small ribosomal subunit [ISS][NAS]
    ribosome [NAS]
    Biological Process: mitotic spindle elongation [IMP]
    mitotic spindle organization [IMP]
    translational initiation [NAS]
    translation [ISS][NAS]
    Molecular Function: RNA binding [IEA]
    structural constituent of ribosome [ISS][NAS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLVIPEKFQ HILRIMNTNI DGKRKVGIAM TAIKGVGRRY SNIVLKKADV DLTKRAGECT  60
   61 EEEVDKVVTI ISNPLQYKVP NWFLNRQKDI IDGKYWQLTS SNLDSKLRDD LERLKKIRSH 120
  121 RGLRHYWGLR VRGQHTKTTG RRGRTVGVSK KK

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..152] PSI-BLAST 41.69897 Structure of the ribosomal 80S-eEF2-sordarin complex from yeast obtained by docking atomic models for RNA and protein components into a 11.7 A cryo-EM map. This file, 1S1H, Contains 40S subunit. The 60S Ribosomal Subunit Is In File 1S1I.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

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