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Protein Overview: CG30122-PB

General Information:
Name(s) found: CG30122-PB / FBpp0085841 [FlyBase]
Description(s) found:
Found 19 descriptions.
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  • This gene is referred to in FlyBase by the symbol Dmel\CG30122 (CG30122, FBgn0050122). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is 2R:14519833..14526773. It has the cytological map location 55E3. Based on sequence similarity, it is predicted to have molecular function</span>: mRNA binding. The biological processes in which it is involved are not known. 6 alleles are reported. No phenotypic data is available. It has 4 annotated transcripts and 4 annotated polypeptides. [FlyBase]
    • Organism: Drosophila melanogaster
    Length: 1271 amino acids

    Gene Ontology:
    Cellular Component: precatalytic spliceosome [IDA]
    heterogeneous nuclear ribonucleoprotein complex [ISS]
    Biological Process: cell killing [IEA]
    nuclear mRNA splicing, via spliceosome [IC]
    Molecular Function: ATP binding [IEA]
    mRNA binding [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDVAKLEKMK VVDLRNELQS RGLDTKGVKA VLVERLRAYV EGGAGDGENA PVTPSRRQRR  60
   61 TRSMSRSPSP VQAAPVAAEP VLDTLEEEEQ PEDKTVPQPE PESEQPAAEP EPEQSEPEEA 120
  121 EPAAAVTEDT TVNQAVNEES QPEPEEFDEK SETDDKQETI EEAVPAVVPQ NEVADEPMEE 180
  181 DHDAAPEEQE PTQTEEPVEE KPAESTVAEH QSNGDSQKMD VDEEDSAAPK TAEETEPAAK 240
  241 PEDQPPERRK RSHSRSKSRS RSGSRSSKHR GSVGDKRESK AAAEERTVPE DEPTIEENKV 300
  301 GLSWLDSDLH LRIDPTTFAS AKPLTSEIYS LIWSGARANY GVREGKVCFE VRLSEESVPE 360
  361 NSHYFRDEPH VRGFRVGFSM PKSSLLLGEA EHSFGYCETG RKATQSEFTD YGKPYQLDDV 420
  421 IGCYLDLESE PCTINYTLNG EDLGVAFEFE KSILGEEGAL FPHIVTKGYE YLVNFSDTEQ 480
  481 LLVNAERPTR KRRKPRKDED KDKDDDKDDN DGEKWKVLDE ATADDDEVEK KDEDGKASSE 540
  541 KDEEEAEDPE KAKEDEAAPK TETEAETKVE APAEAAKPES EATEASETAE TSTEKSSETA 600
  601 AVSNGDAAAE QANDEKASED KKPSENNDEE DEDGPSPNKR PKTDGDSEKA ESEKEKDRSQ 660
  661 TTEDEYEDVV PEPRDTAALL EGYVLIGLVP VEKLVSGPQR VGSRKECEVI LLVGLPGAGK 720
  721 THWAHKHVAE NADKRYELIG PDAFISKMTI DGASRKTVHK GRWDKVYEIC LNSLAALEDI 780
  781 AMKRRRNFIL DQTNVYASAQ RRKMKGFNDF KRIAVVCIPS EDELKRRIAE KEEKGNAFTV 840
  841 KESTINNLRA NFTLPSLEFG WFDDINYTEL TGDEAKSEVK KYNEKGKKAI DAERSRDKRS 900
  901 RGSRDNYRRD DRNRNRYNDD RRRDYGGQRH ESRWSDSRRG GGGGGYSSNS GGGGSRGYDN 960
  961 RRNYNSGSGG QQNWVQNSRR SGYDDRGYGG GGSGSRGYDN RNRGYAGGSG GGGGGGGGGG1020
 1021 GGGGQQNWMQ NNRRSGYDDR GYGSSRDYRD RDRGNDRSRM GSNDRNRGSS QSSYRSGGGT1080
 1081 HQQRDFRPGH RDTKEDSRGG YERSAGQSLP KYGNNTAVGG GYDQYKQQGG APGGGKASLS1140
 1141 GKWSTYSQHH QQQQAPQHQQ TGIWQTQQQS QQYQQPQQAA AGQQQYWAYN QMQSYGNQQA1200
 1201 WQSADPQQQQ QWMSWWQQQQ QGSGGAAAGN ASGGSGVNVG GGAGNNDGGA ANHYWSQYSY1260
 1261 STQSNAGADK K

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..272] PSI-BLAST 8.39794 Heavy meromyosin subfragment
    2 View Details [273..520] FFAS03 3.28 No description for 2v24A was found.
    3 View Details [521..593] deduced N/A No confident structure predictions are available.
    4 View Details [594..760] MSA 1.164994 View MSA. No confident structure predictions are available.
    5 View Details [761..854] deduced N/A No confident structure predictions are available.
    6 View Details [855..1271] PSI-BLAST 21.69897 No description for 1y0fA was found.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.98

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle