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Protein Overview: CG8079-PB

General Information:
Name(s) found: CG8079-PB / FBpp0086499 [FlyBase]
Description(s) found:
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  • gi|24653802|ref|NP_725443.1| CG8079, isoform B [Drosophila melanogaster] [NCBI NR]
  • gi|21627145|gb|AAM68526.1| CG8079, isoform B [Drosophila melanogaster] [NCBI NR]
  • This gene is referred to in FlyBase by the symbol Dmel\CG8079 (CG8079, FBgn0034002). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is 2R:11105886..11111329. It has the cytological map location 51E7. An electronic pipeline based on InterPro domains suggests that it has the molecular function</span>: nucleic acid binding. The biological processes in which it is involved are not known. 2 alleles are reported. No phenotypic data is available. It has 2 annotated transcripts and 2 annotated polypeptides. [FlyBase]
  • >CG8079-PB translation from_gene[CG8079 CG8079 FBgn0034002] seq_release:3 mol_weight=66717 cds_boundaries:(2R:10,282,189..10,287,270[+]) aa_length:599 transcript_info:[CG8079-RB seq_release:3] gene_info:[gene symbol:CG8079 FBgn0034002 gene_boundaries:( [hmr_yeast5_DM3-1_pombe.fasta]
  • (Q8MLA6) CG8079-PB [DrosMelano7227.FASTAC.txt]
  • CG8079-PB, isoform B [Drosophila melanogaster]gi|24653802|ref|NP_725443.1| CG8079-PB [Drosophila melanogaster] [nrdb_11152004_Chlamydomonas]
  • type=protein; loc=2R:join(11105969..11106160,11106218..11106341,11108934..11109070,11109233..11109322,11109549..11109930,11110002..11110487,11110547..11110664,11110726..11110831,11110889..11111053); ID=FBpp0086499; name=CG8079-PB; parent=FBgn0034002,FBtr0 [fly-100309-contam.fasta]
  • CG8079-PB, isoform B [Drosophila melanogaster] [nr-271106-contam.fasta]
  • type=protein; loc=2R:join(11105969..11106160,11106218..11106341,11108934..11109070,11109233..11109322,11109549..11109930,11110002..11110487,11110547..11110664,11110726..11110831,11110889..11111053); ID=FBpp0086499; name=CG8079-PB; parent=FBgn0034002,FBtr0087367; dbxref=FlyBase:FBpp0086499,FlyBase_Annotation_IDs:CG8079-PB,GB_protein:AAM68526.1,REFSEQ:NP_725443,GB_protein:AAM68526; MD5=e24f14a6306a5c1e0aca8e041b8fcb72; length=599; release=r5.16; species=Dmel; [fly-contam-His-TEV-Tub4complex.fasta]
  • type=protein; loc=2R:join(11105969..11106160,11106218..11106341,11108934..11109070,11109233..11109322,11109549..11109930,11110002..11110487,11110547..11110664,11110726..11110831,11110889..11111053); ID=FBpp0086499; name=CG8079-PB; parent=FBgn0034002,FBtr0087367; dbxref=FlyBase:FBpp0086499,FlyBase_Annotation_IDs:CG8079-PB,GB_protein:AAM68526.1,REFSEQ:NP_725443,GB_protein:AAM68526; MD5=e24f14a6306a5c1e0aca8e041b8fcb72; length=599; release=r5.21; species=Dmel; [Other_drosophila_na_09-09-2009_reversed.fasta]
  • CG8079, isoform B OS=Drosophila melanogaster GN=CG8079-RB PE=2 SV=1 [UniProt_drosophila_07-01-2011_reversed.fasta]
  • type=protein; loc=2R:join(11105969..11106160,11106218..11106341,11108934..11109070,11109233..11109322,11109549..11109930,11110002..11110487,11110547..11110664,11110726..11110831,11110889..11111053); ID=FBpp0086499; name=CG8079-PB; parent=FBgn0034002,FBtr0087367; dbxref=FlyBase:FBpp0086499,FlyBase_Annotation_IDs:CG8079-PB,GB_protein:AAM68526.1,REFSEQ:NP_725443,GB_protein:AAM68526,FlyMine:FBpp0086499,modMine:FBpp0086499; MD5=e24f14a6306a5c1e0aca8e041b8fcb72; length=599; release=r5.46; species=Dmel; [fly-062812-sfps-sandra-contam.fasta]
  • type=protein; loc=2R:join(15218464..15218655,15218713..15218836,15221429..15221565,15221728..15221817,15222044..15222425,15222497..15222982,15223042..15223159,15223221..15223326,15223384..15223548); ID=FBpp0086499; name=CG8079-PB; parent=FBgn0034002,FBtr0087367; dbxref=FlyBase:FBpp0086499,FlyBase_Annotation_IDs:CG8079-PB,GB_protein:AAM68526.1,REFSEQ:NP_725443,GB_protein:AAM68526,FlyMine:FBpp0086499,modMine:FBpp0086499; MD5=e24f14a6306a5c1e0aca8e041b8fcb72; length=599; release=r6.02; species=Dmel; [fly-2014-05-contam.fasta]
  • type=protein; loc=2R:join(15218464..15218655,15218713..15218836,15221429..15221565,15221728..15221817,15222044..15222425,15222497..15222982,15223042..15223159,15223221..15223326,15223384..15223548); ID=FBpp0086499; name=CG8079-PB; parent=FBgn0034002,FBtr0087367; dbxref=FlyBase:FBpp0086499,FlyBase_Annotation_IDs:CG8079-PB,GB_protein:AAM68526.1,REFSEQ:NP_725443,GB_protein:AAM68526,FlyMine:FBpp0086499,modMine:FBpp0086499; MD5=e24f14a6306a5c1e0aca8e041b8fcb72; length=599; release=r6.07; species=Dmel; [fly-08202015-contam.fasta]
  • Isoform of Q7K0W0, CG8079, isoform B OS=Drosophila melanogaster GN=CG8079-RB PE=1 SV=1 [DROME.fasta.20160308]
  • FBpp0086499 type=protein; loc=2R:join(15218464..15218655,15218713..15218836,15221429..15221565,15221728..15221817,15222044..15222425,15222497..15222982,15223042..15223159,15223221..15223326,15223384..15223548); ID=FBpp0086499; name=CG8079-PB; parent=FBgn0034002,FBtr0087367; dbxref=FlyBase:FBpp0086499,FlyBase_Annotation_IDs:CG8079-PB,GB_protein:AAM68526.1,REFSEQ:NP_725443,GB_protein:AAM68526,FlyMine:FBpp0086499,modMine:FBpp0086499; MD5=e24f14a6306a5c1e0aca8e041b8fcb72; length=599; release=r6.09; species=Dmel; [dmel-all-translation-r6.09.fasta]
  • [fly-122215-dmel-6-09-contam.fasta]
  • type=protein; loc=2R:join(15218464..15218655,15218713..15218836,15221429..15221565,15221728..15221817,15222044..15222425,15222497..15222982,15223042..15223159,15223221..15223326,15223384..15223548); ID=FBpp0086499; name=CG8079-PB; parent=FBgn0034002,FBtr0087367; dbxref=FlyBase:FBpp0086499,FlyBase_Annotation_IDs:CG8079-PB,GB_protein:AAM68526.1,REFSEQ:NP_725443,GB_protein:AAM68526,UniProt/TrEMBL:A1Z9Z1,FlyMine:FBpp0086499,modMine:FBpp0086499; MD5=e24f14a6306a5c1e0aca8e041b8fcb72; length=599; release=r6.14; species=Dmel; [fly-dmel-jan2017-sandracontam.fasta]
    • Organism: Drosophila melanogaster
    Length: 599 amino acids

    Gene Ontology:
    Cellular Component: precatalytic spliceosome [IDA]
    Biological Process: nuclear mRNA splicing, via spliceosome [IC]
    Molecular Function: nucleic acid binding [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLPAEEEDL ADTVAKYDSI ELKSIQDLET CEQQQLLQYV EKLHGIIRKY DTKLASYKQK  60
   61 LLHYVSREEK VSCDKASQAT ESELQECQYS MENDEDTNKK DQPNDLSATD AFSFVDEMRQ 120
  121 AAKHAENLNN FVYEHTSGMY YDPKTGYYYN AEYGLYYDGN NGCYYSYDHA KDSYEFHSQA 180
  181 QANDAAKPES EDEDLEVQFD ELGGVITDHE TLKKIKAEKQ KAKDQAEKSK RKAKKKKSKK 240
  241 HSKKRSKKER RHKSKKRHRH SDDERSNDAE EGELSQSSDS SSDSSNEDSS SNTEDSSVPV 300
  301 FKAAGRFQDI AKKYPPSLRI IVQETNVESL KVGSLHLITY KGGSLGREGA HDVIIPDVNV 360
  361 SKCHLKFKYE NKLGIYQCLD LGSRNGTILN GSPMSSDAMD LVHGSVITLG QTRLLCHVHE 420
  421 GNSTCGLCEP GLLIENSPPV VAAVASSTAS VLSHKEQLKK LQRKYGLENE KFVDTSGNGQ 480
  481 SNYNDRAATR RVQVGSSTDK EKTEVACVNT EIGSSNKGFK MLSKLGWQKG EKLGKTNASA 540
  541 GLLEPINVVA NEGTSGLGNS DPVLSSSRTI DKRKLANLKI TQARYQRASD MFGQSDDSD

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..106] deduced N/A No confident structure predictions are available.
    2 View Details [107..304] MSA 5.250993 View MSA. No confident structure predictions are available.
    3 View Details [305..467] PSI-BLAST 14.0 Solution Structure of human Ki67 FHA Domain
    4 View Details [468..599] MSA 18.256996 View MSA. No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2 No functions predicted.
    3
    Term Confidence Notes
  • binding
    		•  0.962970280214435 bayes_pls_golite062009
  • protein binding
    		•  0.56456434217804 bayes_pls_golite062009
    4 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle