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Protein Overview: Cpsf160-PB

General Information:
Name(s) found: Cpsf160-PB / FBpp0088317 [FlyBase]
Description(s) found:
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  • gi|24653655|ref|NP_725397.1| cleavage and polyadenylation specificity factor, isoform B [Drosophila melanogaster] [NCBI NR]
  • gi|21627189|gb|AAM68553.1| cleavage and polyadenylation specificity factor, isoform B [Drosophila melanogaster] [NCBI NR]
  • gi|15292103|gb|AAK93320.1| LD38533p [Drosophila melanogaster] [NCBI NR]
  • The gene Cleavage and polyadenylation specificity factor 160 is referred to in FlyBase by the symbol Dmel\Cpsf160 (CG10110, FBgn0024698). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is 2R:10386194..10390978. It has the cytological map location 51A4. There is experimental evidence that it has the molecular function</span>: protein binding. Based on sequence similarity, it is predicted to be involved in the biological process</span>: mRNA polyadenylation; mRNA cleavage. 9 alleles are reported. The phenotypes of these alleles are annotated with: embryonic/first instar larval cuticle; hypostomal sclerite. It has 2 annotated transcripts and 2 annotated polypeptides. [FlyBase]
  • >CG10110-PB translation from_gene[CG10110 cpsf FBgn0024698] seq_release:3 mol_weight=160722 cds_boundaries:(2R:9,562,542..9,567,090[-]) aa_length:1420 transcript_info:[CG10110-RB seq_release:3] gene_info:[gene symbol:cpsf FBgn0024698 gene_boundaries:(2 [hmr_yeast5_DM3-1_pombe.fasta]
  • CG10110-PB, isoform B [Drosophila melanogaster]gi|24653655|ref|NP_725397.1| CG10110-PB [Drosophila melanogaster]gi|15292103|gb|AAK93320.1| LD38533p [Drosophila melanogaster] [nrdb_11152004_Chlamydomonas]
  • type=protein; loc=2R:complement(10386318..10388801,10388859..10389344,10389403..10389966,10390141..10390869); ID=FBpp0088317; name=cpsf-PB; parent=FBgn0024698,FBtr0089257; dbxref=FlyBase:FBpp0088317,FlyBase_Annotation_IDs:CG10110-PB,GB_protein:AAM68553.1, [fly-100309-contam.fasta]
  • LD38533p [Drosophila melanogaster] [nr-271106-contam.fasta]
  • CG10110-PB, isoform B [Drosophila melanogaster] [nr-271106-contam.fasta]
  • cleavage and polyadenylation specificity factor CG10110-PB, isoform B [Drosophila melanogaster] [nr-271106-contam.fasta]
  • type=protein; loc=2R:complement(10386318..10388801,10388859..10389344,10389403..10389966,10390141..10390869); ID=FBpp0088317; name=cpsf-PB; parent=FBgn0024698,FBtr0089257; dbxref=FlyBase:FBpp0088317,FlyBase_Annotation_IDs:CG10110-PB,GB_protein:AAM68553.1,REFSEQ:NP_725397,GB_protein:AAM68553; MD5=54cc7f3cdb0e483c36c505965a5ec43d; length=1420; release=r5.16; species=Dmel; [fly-contam-His-TEV-Tub4complex.fasta]
  • type=protein; loc=2R:complement(10386318..10388801,10388859..10389344,10389403..10389966,10390141..10390869); ID=FBpp0088317; name=Cpsf160-PB; parent=FBgn0024698,FBtr0089257; dbxref=FlyBase:FBpp0088317,FlyBase_Annotation_IDs:CG10110-PB,GB_protein:AAM68553.1,REFSEQ:NP_725397,GB_protein:AAM68553; MD5=54cc7f3cdb0e483c36c505965a5ec43d; length=1420; release=r5.21; species=Dmel; [Other_drosophila_na_09-09-2009_reversed.fasta]
  • Isoform B of Cleavage and polyadenylation specificity factor subunit 1 OS=Drosophila melanogaster GN=Cpsf160 [UniProt_drosophila_07-01-2011_reversed.fasta]
  • type=protein; loc=2R:complement(10386318..10388801,10388859..10389344,10389403..10389966,10390141..10390869); ID=FBpp0088317; name=Cpsf160-PB; parent=FBgn0024698,FBtr0089257; dbxref=FlyBase:FBpp0088317,FlyBase_Annotation_IDs:CG10110-PB,GB_protein:AAM68553.1,REFSEQ:NP_725397,GB_protein:AAM68553,FlyMine:FBpp0088317,modMine:FBpp0088317; MD5=54cc7f3cdb0e483c36c505965a5ec43d; length=1420; release=r5.46; species=Dmel; [fly-062812-sfps-sandra-contam.fasta]
  • type=protein; loc=2R:complement(join(14502636..14503364,14501898..14502461,14501354..14501839,14498813..14501296)); ID=FBpp0088317; name=Cpsf160-PB; parent=FBgn0024698,FBtr0089257; dbxref=FlyBase:FBpp0088317,FlyBase_Annotation_IDs:CG10110-PB,GB_protein:AAM68553.1,REFSEQ:NP_725397,GB_protein:AAM68553,FlyMine:FBpp0088317,modMine:FBpp0088317; MD5=54cc7f3cdb0e483c36c505965a5ec43d; length=1420; release=r6.02; species=Dmel; [fly-2014-05-contam.fasta]
  • type=protein; loc=2R:complement(join(14502636..14503364,14501898..14502461,14501354..14501839,14498813..14501296)); ID=FBpp0088317; name=Cpsf160-PB; parent=FBgn0024698,FBtr0089257; dbxref=FlyBase:FBpp0088317,FlyBase_Annotation_IDs:CG10110-PB,GB_protein:AAM68553.1,REFSEQ:NP_725397,GB_protein:AAM68553,FlyMine:FBpp0088317,modMine:FBpp0088317; MD5=54cc7f3cdb0e483c36c505965a5ec43d; length=1420; release=r6.07; species=Dmel; [fly-08202015-contam.fasta]
  • Isoform of Q9V726, Isoform B of Cleavage and polyadenylation specificity factor subunit 1 OS=Drosophila melanogaster GN=Cpsf160 [DROME.fasta.20160308]
  • FBpp0088317 type=protein; loc=2R:complement(join(14502636..14503364,14501898..14502461,14501354..14501839,14498813..14501296)); ID=FBpp0088317; name=Cpsf160-PB; parent=FBgn0024698,FBtr0089257; dbxref=FlyBase:FBpp0088317,FlyBase_Annotation_IDs:CG10110-PB,GB_protein:AAM68553.1,REFSEQ:NP_725397,GB_protein:AAM68553,FlyMine:FBpp0088317,modMine:FBpp0088317; MD5=54cc7f3cdb0e483c36c505965a5ec43d; length=1420; release=r6.09; species=Dmel; [dmel-all-translation-r6.09.fasta]
  • [fly-122215-dmel-6-09-contam.fasta]
  • type=protein; loc=2R:complement(join(14502636..14503364,14501898..14502461,14501354..14501839,14498813..14501296)); ID=FBpp0088317; name=Cpsf160-PB; parent=FBgn0024698,FBtr0089257; dbxref=FlyBase:FBpp0088317,FlyBase_Annotation_IDs:CG10110-PB,GB_protein:AAM68553.1,REFSEQ:NP_725397,GB_protein:AAM68553,FlyMine:FBpp0088317,modMine:FBpp0088317; MD5=54cc7f3cdb0e483c36c505965a5ec43d; length=1420; release=r6.14; species=Dmel; [fly-dmel-jan2017-sandracontam.fasta]
    • Organism: Drosophila melanogaster
    Length: 1420 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFSMCKQTHS ATAVEFSIAC RFFNNLDENL VVAGANVLKV YRIAPNVEAS QRQKLNPSEM  60
   61 RLAPKMRLEC LATYTLYGNV MSLQCVSLAG AMRDALLISF KDAKLSVLQH DPDTFALKTL 120
  121 SLHYFEEDDI RGGWTGRYFV PTVRVDPDSR CAVMLVYGKR LVVLPFRKDN SLDEIELADV 180
  181 KPIKKAPTAM VSRTPIMASY LIALRDLDEK IDNVLDIQFL HGYYEPTLLI LYEPVRTCPG 240
  241 RIKVYPIQKP IGGCLVMTVN AVIYLNQSVP PYGVSLNSSA DNSTAFPLKP QDGVRISLDC 300
  301 ANFAFIDVDK LVISLRTGDL YVLTLCVDSM RTVRNFHFHK AAASVLTSCI CVLHSEYIFL 360
  361 GSRLGNSLLL HFTEEDQSTV ITLDEVEQQS EQQQRNLQDE DQNLEEIFDV DQLEMAPTQA 420
  421 KSRRIEDEEL EVYGSGAKAS VLQLRKFIFE VCDSLMNVAP INYMCAGERV EFEEDGVTLR 480
  481 PHAESLQDLK IELVAATGHS KNGALSVFVN CINPQIITSF ELDGCLDVWT VFDDATKKSS 540
  541 RNDQHDFMLL SQRNSTLVLQ TGQEINEIEN TGFTVNQPTI FVGNLGQQRF IVQVTTRHVR 600
  601 LLQGTRLIQN VPIDVGSPVV QVSIADPYVC LRVLNGQVIT LALRETRGTP RLAINKHTIS 660
  661 SSPAVVAISA YKDLSGLFTV KGDDINLTGS SNSAFGHSFG GYMKAEPNMK VEDEEDLLYG 720
  721 DAGSAFKMNS MADLAKQSKQ KNSDWWRRLL VQAKPSYWLV VARQSGTLEI YSMPDMKLVY 780
  781 LVNDVGNGSM VLTDAMEFVP ISLTTQENSK AGIVQACMPQ HANSPLPLEL SVIGLGLNGE 840
  841 RPLLLVRTRV ELLIYQVFRY PKGHLKIRFR KMDQLNLLDQ QPTHIDLDEN DEQEEIESYQ 900
  901 MQPKYVQKLR PFANVGGLSG VMVCGVNPCF VFLTFRGELR IHRLLGNGDV RSFAAFNNVN 960
  961 IPNGFLYFDT TYELKISVLP SYLSYDSVWP VRKVPLRCTP RQLVYHRENR VYCLITQTEE1020
 1021 PMTKYYRFNG EDKELSEESR GERFIYPIGS QFEMVLISPE TWEIVPDASI TFEPWEHVTA1080
 1081 FKIVKLSYEG TRSGLKEYLC IGTNFNYSED ITSRGNIHIY DIIEVVPEPG KPMTKFKIKE1140
 1141 IFKKEQKGPV SAISDVLGFL VTGLGQKIYI WQLRDGDLIG VAFIDTNIYV HQIITVKSLI1200
 1201 FIADVYKSIS LLRFQEEYRT LSLASRDFNP LEVYGIEFMV DNSNLGFLVT DAERNIIVYM1260
 1261 YQPEARESLG GQKLLRKADY HLGQVVNTMF RVQCHQKGLH QRQPFLYENK HFVVYGTLDG1320
 1321 ALGYCLPLPE KVYRRFLMLQ NVLLSYQEHL CGLNPKEYRT LKSSKKQGIN PSRCIIDGDL1380
 1381 IWSYRLMANS ERNEVAKKIG TRTEEILGDL LEIERLASVF

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..166] MSA 4.093989 View MSA. No confident structure predictions are available.
    2 View Details [167..236] MSA 1.103993 View MSA. No confident structure predictions are available.
    3 View Details [237..386] deduced N/A No confident structure predictions are available.
    4 View Details [387..722] PSI-BLAST 46.09691 Crystal Structure of the DDB1 BPB Domain
    5 View Details [723..1420] PSI-BLAST 151.0 Crystal Structure of DDB1 In Complex with Simian Virus 5 V Protein


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.63

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle