| Protein: | Cpsf160-PB |
| Organism: | Drosophila melanogaster |
| Length: | 1420 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Cpsf160-PB.
| Description | E-value | Query Range |
Subject Range |
|
|
1310.0 | [0..1] | [1420..1] |
|
Region A: Residues: [1-166] |
1 11 21 31 41 51
| | | | | |
1 MFSMCKQTHS ATAVEFSIAC RFFNNLDENL VVAGANVLKV YRIAPNVEAS QRQKLNPSEM 60
61 RLAPKMRLEC LATYTLYGNV MSLQCVSLAG AMRDALLISF KDAKLSVLQH DPDTFALKTL 120
121 SLHYFEEDDI RGGWTGRYFV PTVRVDPDSR CAVMLVYGKR LVVLPF
|
| Detection Method: |  |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [167-236] |
1 11 21 31 41 51
| | | | | |
1 RKDNSLDEIE LADVKPIKKA PTAMVSRTPI MASYLIALRD LDEKIDNVLD IQFLHGYYEP 60
61 TLLILYEPVR
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [237-386] |
1 11 21 31 41 51
| | | | | |
1 TCPGRIKVYP IQKPIGGCLV MTVNAVIYLN QSVPPYGVSL NSSADNSTAF PLKPQDGVRI 60
61 SLDCANFAFI DVDKLVISLR TGDLYVLTLC VDSMRTVRNF HFHKAAASVL TSCICVLHSE 120
121 YIFLGSRLGN SLLLHFTEED QSTVITLDEV
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [387-722] |
1 11 21 31 41 51
| | | | | |
1 EQQSEQQQRN LQDEDQNLEE IFDVDQLEMA PTQAKSRRIE DEELEVYGSG AKASVLQLRK 60
61 FIFEVCDSLM NVAPINYMCA GERVEFEEDG VTLRPHAESL QDLKIELVAA TGHSKNGALS 120
121 VFVNCINPQI ITSFELDGCL DVWTVFDDAT KKSSRNDQHD FMLLSQRNST LVLQTGQEIN 180
181 EIENTGFTVN QPTIFVGNLG QQRFIVQVTT RHVRLLQGTR LIQNVPIDVG SPVVQVSIAD 240
241 PYVCLRVLNG QVITLALRET RGTPRLAINK HTISSSPAVV AISAYKDLSG LFTVKGDDIN 300
301 LTGSSNSAFG HSFGGYMKAE PNMKVEDEED LLYGDA
|
| Detection Method: | |
| Confidence: | 46.09691 |
| Match: | 2b5nA |
| Description: | Crystal Structure of the DDB1 BPB Domain |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [723-1420] |
1 11 21 31 41 51
| | | | | |
1 GSAFKMNSMA DLAKQSKQKN SDWWRRLLVQ AKPSYWLVVA RQSGTLEIYS MPDMKLVYLV 60
61 NDVGNGSMVL TDAMEFVPIS LTTQENSKAG IVQACMPQHA NSPLPLELSV IGLGLNGERP 120
121 LLLVRTRVEL LIYQVFRYPK GHLKIRFRKM DQLNLLDQQP THIDLDENDE QEEIESYQMQ 180
181 PKYVQKLRPF ANVGGLSGVM VCGVNPCFVF LTFRGELRIH RLLGNGDVRS FAAFNNVNIP 240
241 NGFLYFDTTY ELKISVLPSY LSYDSVWPVR KVPLRCTPRQ LVYHRENRVY CLITQTEEPM 300
301 TKYYRFNGED KELSEESRGE RFIYPIGSQF EMVLISPETW EIVPDASITF EPWEHVTAFK 360
361 IVKLSYEGTR SGLKEYLCIG TNFNYSEDIT SRGNIHIYDI IEVVPEPGKP MTKFKIKEIF 420
421 KKEQKGPVSA ISDVLGFLVT GLGQKIYIWQ LRDGDLIGVA FIDTNIYVHQ IITVKSLIFI 480
481 ADVYKSISLL RFQEEYRTLS LASRDFNPLE VYGIEFMVDN SNLGFLVTDA ERNIIVYMYQ 540
541 PEARESLGGQ KLLRKADYHL GQVVNTMFRV QCHQKGLHQR QPFLYENKHF VVYGTLDGAL 600
601 GYCLPLPEKV YRRFLMLQNV LLSYQEHLCG LNPKEYRTLK SSKKQGINPS RCIIDGDLIW 660
661 SYRLMANSER NEVAKKIGTR TEEILGDLLE IERLASVF
|
| Detection Method: | |
| Confidence: | 151.0 |
| Match: | 2b5lA |
| Description: | Crystal Structure of DDB1 In Complex with Simian Virus 5 V Protein |
Matching Structure (courtesy of the PDB): |
|
