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Protein Overview: Obp50a-PA

General Information:
Name(s) found: Obp50a-PA / FBpp0086685 [FlyBase]
Description(s) found:
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  • gi|24653631|ref|NP_725385.1| Odorant-binding protein 50a, isoform A [Drosophila melanogaster] [NCBI NR]
  • gi|21645432|gb|AAM71002.1| Odorant-binding protein 50a, isoform A [Drosophila melanogaster] [NCBI NR]
  • The gene Odorant-binding protein 50a is referred to in FlyBase by the symbol Dmel\Obp50a (CG30067, FBgn0050067). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is 2R:10257869..10258529. It has the cytological map location 50F6. Based on sequence similarity, it is predicted to have molecular function</span>: odorant binding. Based on sequence similarity, it is predicted to be involved in the biological process</span>: sensory perception of chemical stimulus. 2 alleles are reported. No phenotypic data is available. It has 2 annotated transcripts and 2 annotated polypeptides. [FlyBase]
  • >CG30067-PA translation from_gene[CG30067 Obp50a FBgn0050067] seq_release:3 mol_weight=20605 cds_boundaries:(2R:9,434,093..9,434,750[-]) aa_length:181 transcript_info:[CG30067-RA seq_release:3] gene_info:[gene symbol:Obp50a FBgn0050067 gene_boundaries: [hmr_yeast5_DM3-1_pombe.fasta]
  • (Q8ML85) CG30067-PA [DrosMelano7227.FASTAC.txt]
  • CG30067-PA, isoform A [Drosophila melanogaster]gi|24653631|ref|NP_725385.1| CG30067-PA [Drosophila melanogaster] [nrdb_11152004_Chlamydomonas]
  • type=protein; loc=2R:complement(10257869..10258234,10258292..10258375,10258434..10258529); ID=FBpp0086685; name=Obp50a-PA; parent=FBgn0050067,FBtr0087557; dbxref=FlyBase:FBpp0086685,FlyBase_Annotation_IDs:CG30067-PA,GB_protein:AAM71002.1,REFSEQ:NP_725385, [fly-100309-contam.fasta]
  • Odorant-binding protein 50a CG30067-PA, isoform A [Drosophila melanogaster] [nr-271106-contam.fasta]
  • CG30067-PA, isoform A [Drosophila melanogaster] [nr-271106-contam.fasta]
  • type=protein; loc=2R:complement(10257869..10258234,10258292..10258375,10258434..10258529); ID=FBpp0086685; name=Obp50a-PA; parent=FBgn0050067,FBtr0087557; dbxref=FlyBase:FBpp0086685,FlyBase_Annotation_IDs:CG30067-PA,GB_protein:AAM71002.1,REFSEQ:NP_725385,GB_protein:AAM71002; MD5=eb9846ebb2bcb28ad62ef13bead83c50; length=181; release=r5.16; species=Dmel; [fly-contam-His-TEV-Tub4complex.fasta]
  • type=protein; loc=2R:complement(10257869..10258234,10258292..10258375,10258434..10258529); ID=FBpp0086685; name=Obp50a-PA; parent=FBgn0050067,FBtr0087557; dbxref=FlyBase:FBpp0086685,FlyBase_Annotation_IDs:CG30067-PA,GB_protein:AAM71002.1,REFSEQ:NP_725385,GB_protein:AAM71002; MD5=eb9846ebb2bcb28ad62ef13bead83c50; length=181; release=r5.21; species=Dmel; [Other_drosophila_na_09-09-2009_reversed.fasta]
  • Odorant-binding protein 50a, isoform A OS=Drosophila melanogaster GN=Obp50a PE=4 SV=1 [UniProt_drosophila_07-01-2011_reversed.fasta]
  • type=protein; loc=2R:complement(10257869..10258234,10258292..10258375,10258434..10258529); ID=FBpp0086685; name=Obp50a-PA; parent=FBgn0050067,FBtr0087557; dbxref=FlyBase:FBpp0086685,FlyBase_Annotation_IDs:CG30067-PA,GB_protein:AAM71002.1,REFSEQ:NP_725385,GB_protein:AAM71002,FlyMine:FBpp0086685,modMine:FBpp0086685; MD5=eb9846ebb2bcb28ad62ef13bead83c50; length=181; release=r5.46; species=Dmel; [fly-062812-sfps-sandra-contam.fasta]
  • type=protein; loc=2R:complement(join(14370929..14371024,14370787..14370870,14370364..14370729)); ID=FBpp0086685; name=Obp50a-PA; parent=FBgn0050067,FBtr0087557; dbxref=FlyBase:FBpp0086685,FlyBase_Annotation_IDs:CG30067-PA,GB_protein:AAM71002.1,REFSEQ:NP_725385,GB_protein:AAM71002,FlyMine:FBpp0086685,modMine:FBpp0086685; MD5=eb9846ebb2bcb28ad62ef13bead83c50; length=181; release=r6.02; species=Dmel; [fly-2014-05-contam.fasta]
  • type=protein; loc=2R:complement(join(14370929..14371024,14370787..14370870,14370364..14370729)); ID=FBpp0086685; name=Obp50a-PA; parent=FBgn0050067,FBtr0087557; dbxref=FlyBase:FBpp0086685,FlyBase_Annotation_IDs:CG30067-PA,GB_protein:AAM71002.1,REFSEQ:NP_725385,GB_protein:AAM71002,FlyMine:FBpp0086685,modMine:FBpp0086685; MD5=eb9846ebb2bcb28ad62ef13bead83c50; length=181; release=r6.07; species=Dmel; [fly-08202015-contam.fasta]
  • Isoform of A1Z9Q2, Odorant-binding protein 50a, isoform A OS=Drosophila melanogaster GN=Obp50a PE=4 SV=1 [DROME.fasta.20160308]
  • FBpp0086685 type=protein; loc=2R:complement(join(14370929..14371024,14370787..14370870,14370364..14370729)); ID=FBpp0086685; name=Obp50a-PA; parent=FBgn0050067,FBtr0087557; dbxref=FlyBase:FBpp0086685,FlyBase_Annotation_IDs:CG30067-PA,GB_protein:AAM71002.1,REFSEQ:NP_725385,GB_protein:AAM71002,FlyMine:FBpp0086685,modMine:FBpp0086685; MD5=eb9846ebb2bcb28ad62ef13bead83c50; length=181; release=r6.09; species=Dmel; [dmel-all-translation-r6.09.fasta]
  • [fly-122215-dmel-6-09-contam.fasta]
  • type=protein; loc=2R:complement(join(14370929..14371024,14370787..14370870,14370364..14370729)); ID=FBpp0086685; name=Obp50a-PA; parent=FBgn0050067,FBtr0087557; dbxref=FlyBase:FBpp0086685,FlyBase_Annotation_IDs:CG30067-PA,GB_protein:AAM71002.1,REFSEQ:NP_725385,GB_protein:AAM71002,UniProt/TrEMBL:A1Z9Q1,FlyMine:FBpp0086685,modMine:FBpp0086685; MD5=eb9846ebb2bcb28ad62ef13bead83c50; length=181; release=r6.14; species=Dmel; [fly-dmel-jan2017-sandracontam.fasta]
    • Organism: Drosophila melanogaster
    Length: 181 amino acids

    Gene Ontology:
    Cellular Component: cellular_component [ND]
    Biological Process: sensory perception of chemical stimulus [UNKNOWN]
    Molecular Function: odorant binding [UNKNOWN]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRTGRILVAL IFLGLIIPFR AAKCRAAPKS VQNVHVCCSA PLPNWGVFNR ECHKSAIQAS  60
   61 CRLDCDFNAS SVLQGNRLIQ AKVRPMLERA FSNEPTIDAY ESNFAKCSTV VRSKYQELSP 120
  121 LSRQSDACDR HALFYSLCAY ARLIFTCPDK MWQRNNRMCQ EAKAYAKKCP WPALKMFMRN 180
  181 T

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..181] FFAS03 1.71 Pheromone binding protein

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • odorant binding
    		•  4.34740138836018 bayes_pls_golite062009
  • pheromone binding
    		•  2.50061185527994 bayes_pls_golite062009
  • binding
    		•  1.71868583149917 bayes_pls_golite062009
  • phenylalkylamine binding
    		•  1.10044668642283 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
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