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Protein Overview: Rcd1-PA

General Information:
Name(s) found: Rcd1-PA / FBpp0086708 [FlyBase]
Description(s) found:
Found 19 descriptions.
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  • The gene Reduction in Cnn dots 1 is referred to in FlyBase by the symbol Dmel\Rcd1 (CG8233, FBgn0033897). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is 2R:10035763..10040624. It has the cytological map location 50E1. Its molecular function is unknown. There is experimental evidence that it is involved in the biological process</span>: centriole replication. 3 alleles are reported. No phenotypic data is available. It has 3 annotated transcripts and 3 annotated polypeptides. [FlyBase]
    • Organism: Drosophila melanogaster
    Length: 1001 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: centriole replication [IMP]
    Molecular Function: hydrolase activity [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSFFDCFND FLQSGGNLVQ NVSQEQEQKI ADQELDGVIE LMPPTTPTPS ESSSTISAPS  60
   61 ESSFSEKMEH SYMRDTPVRS DVHNGLTPAR NILVRHPPQC PSCHTYPPQH EELSEIQQAH 120
  121 VPPYDEVVAK EAMNECARIA KYVKNNNSDE QDWVARVNKF NWTPMQEMVF EKVCSILDQD 180
  181 QLARLANDKR QHEPIHRRIS SDKSASRFRK LLASVAWESR ITQWIHALLM EHLSPSYMAS 240
  241 YLEILQTLKT KLPTLVDKML FGRPLNNSQE LLAPVMKKRW EPNIMPKSRQ LTHNAIMVVL 300
  301 PNMPTTGTVS DRMQKWYQAL STITQVVQIS LPNTNNRIGN QNLDHVAETI VSITRVKINE 360
  361 LRTENPSRGI ILVGFNAGAA LALQVALSES VACVVCMGFA YNTIRGPRGT PDDRMLDIKA 420
  421 PILFVIGQNS ARTSQEEMEG LRERMQSESS LVVVGSADDA LRVPKSKRRI EGVTQSMVDY 480
  481 MVVEEIFEFV NRTLSNPPGP RMPTCLMHQQ GYQRLPKQSP HILADGNANK AVQQMRKRKM 540
  541 DGGLDDSMGQ PSKTKFVPHN DAQDYGDAQT TAGGSASLPK VITPGVLGKQ LPPVNLAAGT 600
  601 KIKMIPSSQF VQIKSLPSQS KLINYTLNKP SVGTSSTANI GSVVKTLPCS SVSGQQIITL 660
  661 KTPSGQTQQF ATAATSTGAA GSSTSTGTGQ KKYTVFKNAN GMTMLHLTKS VPTTGSSSGS 720
  721 ANMDLSNIID MPIVFADNEG NIPEHQQADK DIKPAPIRSA NKSPLIISQK IIKEANKPSG 780
  781 MVTSGSITAV SKPGNIVLNK GLQQLLNSSP GGTLATQNKV VYLNRSTIKP MGNVAPGTHR 840
  841 VPIRIVSTPN TGGAVTTTAS SSPIMVDPAT GSKVAKTVNV QTIKPTGSVL AQGTIRQAGN 900
  901 VGTKSYLQMI NTAPGASKTV AGDGKGSVRN IYFKSATGLK QLPVQMLGNR IPGGAVISST 960
  961 ASASSGSPGL RRVVNIGPVS KVTATSTTSS SIAATLTHNK M

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..494] FFAS03 0.999 Epoxide hydrolase, N-terminal domain; Mammalian epoxide hydrolase, C-terminal domain
    2 View Details [495..752] MSA 1.239994 View MSA. No confident structure predictions are available.
    3 View Details [753..862] deduced N/A No confident structure predictions are available.
    4 View Details [863..1001] MSA 4.249997 View MSA. No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • catalytic activity
    		•  1.12620676202498 bayes_pls_golite062009
  • hydrolase activity
    		•  0.756054874596198 bayes_pls_golite062009
    2 No functions predicted.
    3 No functions predicted.
    4 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.93

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle