YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: RN-tre-PB

General Information:
Name(s) found: RN-tre-PB / FBpp0086730 [FlyBase]
Description(s) found:
Found 21 descriptions.
SHOW ALL
  • The gene tre oncogene-related protein is referred to in FlyBase by the symbol Dmel\RN-tre (CG8085, FBgn0020620). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is 2R:9872320..9878191. It has the cytological map location 50C23. An electronic pipeline based on InterPro domains suggests that it has the molecular function</span>: Rab GTPase activator activity. An electronic pipeline based on InterPro domains suggests that it is involved in the biological process</span>: regulation of Rab GTPase activity. 6 alleles are reported. The phenotypes of these alleles are annotated with: mushroom body; Kenyon cell. It has 4 annotated transcripts and 4 annotated polypeptides. [FlyBase]
    • Organism: Drosophila melanogaster
    Length: 457 amino acids

    Gene Ontology:
    Cellular Component: intracellular [IEA]
    Biological Process: regulation of Rab GTPase activity [IEA]
    Molecular Function: Rab GTPase activator activity [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTDGEQQEAL VKRAEDERED IFRRYELGLD PSNVVDSWEN PTFEIYHRTD KYGFLHDSRL  60
   61 PSTRDAQEVH RNKIEMERDK KWMKMLNQWP PPQDKLHKRV YKGIPDRVRM VAWNKLLDIQ 120
  121 QSINNNAGVY LRMLQLARKY STETRQIDAD VNRQFRDNLA FRERYSVKQC SLFNVLNAYS 180
  181 IYNSELGYCQ GMACVAGVLL LYLHEEEAFW ALNTLITDQK YGMHGLFIEG FPKLTRFIDH 240
  241 HDRIMSKIMR KLHKHFTKHN VDALLYAIKW FFVVFVERVP FSLSLRVWDI FMLDGDRVIL 300
  301 SMAITILYLH KDELLRLKDM DAIIEYLQVR LHKNFGYSDD DAIQALERVM KKLKDLKLDV 360
  361 PPPAKSNEFP TRKLGDFVEA DMEKKIGRRR NDYTDAEKQV ITDVISRQEQ NAIDVQSTVS 420
  421 YETSECATGE SCVTHKSLHC LSTNPNACFK QSTYPTC

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..70] deduced N/A No confident structure predictions are available.
    2 View Details [71..361] PSI-BLAST 46.522879 No description for 2qq8A was found.
    3 View Details [362..457] deduced N/A No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.87

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle