YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: RN-tre-PB
Organism: Drosophila melanogaster
Length: 457 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RN-tre-PB.

Description E-value Query
Range
Subject
Range
RN-tre-PA - The gene tre oncogene-related protein is referred to in FlyBase by the symbol Dmel\RN-tre (CG8085, F...
346.0 [0..1] [449..1]

Back

Predicted Domain #1
Region A:
Residues: [1-70]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTDGEQQEAL VKRAEDERED IFRRYELGLD PSNVVDSWEN PTFEIYHRTD KYGFLHDSRL  60
   61 PSTRDAQEVH 

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [71-361]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RNKIEMERDK KWMKMLNQWP PPQDKLHKRV YKGIPDRVRM VAWNKLLDIQ QSINNNAGVY  60
   61 LRMLQLARKY STETRQIDAD VNRQFRDNLA FRERYSVKQC SLFNVLNAYS IYNSELGYCQ 120
  121 GMACVAGVLL LYLHEEEAFW ALNTLITDQK YGMHGLFIEG FPKLTRFIDH HDRIMSKIMR 180
  181 KLHKHFTKHN VDALLYAIKW FFVVFVERVP FSLSLRVWDI FMLDGDRVIL SMAITILYLH 240
  241 KDELLRLKDM DAIIEYLQVR LHKNFGYSDD DAIQALERVM KKLKDLKLDV P

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 46.522879
Match: 2qq8A
Description: No description for 2qq8A was found.

Predicted Domain #3
Region A:
Residues: [362-457]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PPAKSNEFPT RKLGDFVEAD MEKKIGRRRN DYTDAEKQVI TDVISRQEQN AIDVQSTVSY  60
   61 ETSECATGES CVTHKSLHCL STNPNACFKQ STYPTC

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle