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Protein Overview: RpS11-PB

General Information:
Name(s) found: RpS11-PB / FBpp0087114 [FlyBase]
Description(s) found:
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  • gi|24652924|ref|NP_725115.1| ribosomal protein S11, isoform B [Drosophila melanogaster] [NCBI NR]
  • gi|21645481|gb|AAM71029.1| ribosomal protein S11, isoform B [Drosophila melanogaster] [NCBI NR]
  • The gene Ribosomal protein S11 is referred to in FlyBase by the symbol Dmel\RpS11 (CG8857, FBgn0033699). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is 2R:8086524..8088333. It has the cytological map location 48E8-48E9. Based on sequence similarity, it is predicted to have molecular function</span>: structural constituent of ribosome. There is experimental evidence that it is involved in the biological process</span>: mitotic spindle elongation; mitotic spindle organization. 2 alleles are reported. No phenotypic data is available. It has 2 annotated transcripts and 2 annotated polypeptides. [FlyBase]
  • >CG8857-PB translation from_gene[CG8857 CG8857 FBgn0033699] seq_release:3 mol_weight=18103 cds_boundaries:(2R:7,264,182..7,265,499[-]) aa_length:154 transcript_info:[CG8857-RB seq_release:3] gene_info:[gene symbol:CG8857 FBgn0033699 gene_boundaries:(2R [hmr_yeast5_DM3-1_pombe.fasta]
  • (Q8ML06) CG8857-PB [DrosMelano7227.FASTAC.txt]
  • CG8857-PB, isoform B [Drosophila melanogaster]gi|24652924|ref|NP_725115.1| CG8857-PB [Drosophila melanogaster] [nrdb_11152004_Chlamydomonas]
  • type=protein; loc=2R:complement(8086971..8087094,8087339..8087544,8087933..8088055,8088280..8088291); ID=FBpp0087114; name=RpS11-PB; parent=FBgn0033699,FBtr0088006; dbxref=FlyBase:FBpp0087114,FlyBase_Annotation_IDs:CG8857-PB,GB_protein:AAM71029.1,REFSEQ:N [fly-100309-contam.fasta]
  • Ribosomal protein S11 CG8857-PB, isoform B [Drosophila melanogaster] [nr-271106-contam.fasta]
  • CG8857-PB, isoform B [Drosophila melanogaster] [nr-271106-contam.fasta]
  • type=protein; loc=2R:complement(8086971..8087094,8087339..8087544,8087933..8088055,8088280..8088291); ID=FBpp0087114; name=RpS11-PB; parent=FBgn0033699,FBtr0088006; dbxref=FlyBase:FBpp0087114,FlyBase_Annotation_IDs:CG8857-PB,GB_protein:AAM71029.1,REFSEQ:NP_725115,GB_protein:AAM71029; MD5=8bcf49a63f012d0078ee2e094dc3e4f3; length=154; release=r5.16; species=Dmel; [fly-contam-His-TEV-Tub4complex.fasta]
  • type=protein; loc=2R:complement(8086971..8087094,8087339..8087544,8087933..8088055,8088280..8088291); ID=FBpp0087114; name=RpS11-PB; parent=FBgn0033699,FBtr0088006; dbxref=FlyBase:FBpp0087114,FlyBase_Annotation_IDs:CG8857-PB,GB_protein:AAM71029.1,REFSEQ:NP_725115,GB_protein:AAM71029; MD5=8bcf49a63f012d0078ee2e094dc3e4f3; length=154; release=r5.21; species=Dmel; [Other_drosophila_na_09-09-2009_reversed.fasta]
  • Ribosomal protein S11, isoform B OS=Drosophila melanogaster GN=RpS11 PE=1 SV=1 [UniProt_drosophila_07-01-2011_reversed.fasta]
  • type=protein; loc=2R:complement(8086971..8087094,8087339..8087544,8087933..8088055,8088280..8088291); ID=FBpp0087114; name=RpS11-PB; parent=FBgn0033699,FBtr0088006; dbxref=FlyBase:FBpp0087114,FlyBase_Annotation_IDs:CG8857-PB,GB_protein:AAM71029.1,REFSEQ:NP_725115,GB_protein:AAM71029,FlyMine:FBpp0087114,modMine:FBpp0087114; MD5=8bcf49a63f012d0078ee2e094dc3e4f3; length=154; release=r5.46; species=Dmel; [fly-062812-sfps-sandra-contam.fasta]
  • Ribosomal protein S11, isoform B OS=Drosophila melanogaster GN=RpS11 PE=3 SV=1 [UniProt_D_Melanogaster_07132012_07-13-2012_reversed.fasta]
  • type=protein; loc=2R:complement(join(12200775..12200786,12200428..12200550,12199834..12200039,12199466..12199589)); ID=FBpp0087114; name=RpS11-PB; parent=FBgn0033699,FBtr0088006; dbxref=FlyBase:FBpp0087114,FlyBase_Annotation_IDs:CG8857-PB,GB_protein:AAM71029.1,REFSEQ:NP_725115,GB_protein:AAM71029,FlyMine:FBpp0087114,modMine:FBpp0087114; MD5=8bcf49a63f012d0078ee2e094dc3e4f3; length=154; release=r6.02; species=Dmel; [fly-2014-05-contam.fasta]
  • type=protein; loc=2R:complement(join(12200775..12200786,12200428..12200550,12199834..12200039,12199466..12199589)); ID=FBpp0087114; name=RpS11-PB; parent=FBgn0033699,FBtr0088006; dbxref=FlyBase:FBpp0087114,FlyBase_Annotation_IDs:CG8857-PB,GB_protein:AAM71029.1,REFSEQ:NP_725115,GB_protein:AAM71029,FlyMine:FBpp0087114,modMine:FBpp0087114; MD5=8bcf49a63f012d0078ee2e094dc3e4f3; length=154; release=r6.07; species=Dmel; [fly-08202015-contam.fasta]
  • Isoform of Q0E9B6, Ribosomal protein S11, isoform B OS=Drosophila melanogaster GN=RpS11 PE=1 SV=1 [DROME.fasta.20160308]
  • FBpp0087114 type=protein; loc=2R:complement(join(12200775..12200786,12200428..12200550,12199834..12200039,12199466..12199589)); ID=FBpp0087114; name=RpS11-PB; parent=FBgn0033699,FBtr0088006; dbxref=FlyBase:FBpp0087114,FlyBase_Annotation_IDs:CG8857-PB,GB_protein:AAM71029.1,REFSEQ:NP_725115,GB_protein:AAM71029,FlyMine:FBpp0087114,modMine:FBpp0087114; MD5=8bcf49a63f012d0078ee2e094dc3e4f3; length=154; release=r6.09; species=Dmel; [dmel-all-translation-r6.09.fasta]
  • [fly-122215-dmel-6-09-contam.fasta]
  • type=protein; loc=2R:complement(join(12200775..12200786,12200428..12200550,12199834..12200039,12199466..12199589)); ID=FBpp0087114; name=RpS11-PB; parent=FBgn0033699,FBtr0088006; dbxref=FlyBase:FBpp0087114,FlyBase_Annotation_IDs:CG8857-PB,GB_protein:AAM71029.1,REFSEQ:NP_725115,GB_protein:AAM71029,UniProt/TrEMBL:A1Z8U9,FlyMine:FBpp0087114,modMine:FBpp0087114; MD5=8bcf49a63f012d0078ee2e094dc3e4f3; length=154; release=r6.14; species=Dmel; [fly-dmel-jan2017-sandracontam.fasta]
    • Organism: Drosophila melanogaster
    Length: 154 amino acids

    Gene Ontology:
    Cellular Component: cytosolic small ribosomal subunit [ISS]
    Biological Process: mitotic spindle elongation [IMP]
    mitotic spindle organization [IMP]
    translation [ISS]
    Molecular Function: structural constituent of ribosome [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADQQTERSF RKQHAVVVVR RKSPNLKKRP RFYRQIGLGF RAPAEAIDGT YIDKKCPWTG  60
   61 DVRIRGRILT GVVRKAKMQR TIVIRRDYLH FVRKYSRFEK RHRNMSVHCS PVFRDVEHGD 120
  121 IVTIGECRPL SKTVRFNVLK VSKGQGAKKS FKKY

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..154] PSI-BLAST 23.154902 Structure of the ribosomal 80S-eEF2-sordarin complex from yeast obtained by docking atomic models for RNA and protein components into a 11.7 A cryo-EM map. This file, 1S1H, Contains 40S subunit. The 60S Ribosomal Subunit Is In File 1S1I.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle