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Protein Overview: CG13178-PA

General Information:
Name(s) found: CG13178-PA / FBpp0087126 [FlyBase]
Description(s) found:
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  • gi|85857746|gb|ABC86408.1| IP09550p [Drosophila melanogaster] [NCBI NR]
  • gi|7303522|gb|AAF58577.1| CG13178 [Drosophila melanogaster] [NCBI NR]
  • gi|24652889|ref|NP_610731.1| CG13178 [Drosophila melanogaster] [NCBI NR]
  • This gene is referred to in FlyBase by the symbol Dmel\CG13178 (CG13178, FBgn0033685). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is 2R:8030696..8032038. It has the cytological map location 48E2. Its molecular function is unknown. Based on sequence similarity, it is predicted to be involved in the biological process</span>: cilium assembly. 2 alleles are reported. No phenotypic data is available. It has one annotated transcript and one annotated polypeptide. [FlyBase]
  • >CG13178-PA translation from_gene[CG13178 CG13178 FBgn0033685] seq_release:3 mol_weight=34608 cds_boundaries:(2R:7,208,066..7,209,147[-]) aa_length:302 transcript_info:[CG13178-RA seq_release:3] gene_info:[gene symbol:CG13178 FBgn0033685 gene_boundarie [hmr_yeast5_DM3-1_pombe.fasta]
  • (Q9V661) CG13178 protein [DrosMelano7227.FASTAC.txt]
  • (AE003823) CG13178 gene product [Drosophila melanogaster] [yeastflysequest.fasta]
  • CG13178-PA [Drosophila melanogaster]gi|24652889|ref|NP_610731.1| CG13178-PA [Drosophila melanogaster] [nrdb_11152004_Chlamydomonas]
  • type=protein; loc=2R:complement(8030855..8031699,8031876..8031939); ID=FBpp0087126; name=CG13178-PA; parent=FBgn0033685,FBtr0088019; dbxref=FlyBase:FBpp0087126,FlyBase_Annotation_IDs:CG13178-PA,GB_protein:AAF58577.1,REFSEQ:NP_610731,GB_protein:AAF58577; M [fly-100309-contam.fasta]
  • CG13178-PA [Drosophila melanogaster] [nr-271106-contam.fasta]
  • IP09550p [Drosophila melanogaster] [nr-271106-contam.fasta]
  • type=protein; loc=2R:complement(8030855..8031699,8031876..8031939); ID=FBpp0087126; name=CG13178-PA; parent=FBgn0033685,FBtr0088019; dbxref=FlyBase:FBpp0087126,FlyBase_Annotation_IDs:CG13178-PA,GB_protein:AAF58577.1,REFSEQ:NP_610731,GB_protein:AAF58577; MD5=ec5114867512597010d8c04db29ffdad; length=302; release=r5.16; species=Dmel; [fly-contam-His-TEV-Tub4complex.fasta]
  • type=protein; loc=2R:complement(8030855..8031699,8031876..8031939); ID=FBpp0087126; name=CG13178-PA; parent=FBgn0033685,FBtr0088019; dbxref=FlyBase:FBpp0087126,FlyBase_Annotation_IDs:CG13178-PA,GB_protein:AAF58577.1,REFSEQ:NP_610731,GB_protein:AAF58577; MD5=ec5114867512597010d8c04db29ffdad; length=302; release=r5.21; species=Dmel; [Other_drosophila_na_09-09-2009_reversed.fasta]
  • CG13178 OS=Drosophila melanogaster GN=CG13178 PE=2 SV=1 [UniProt_drosophila_07-01-2011_reversed.fasta]
  • type=protein; loc=2R:complement(8030855..8031699,8031876..8031939); ID=FBpp0087126; name=CG13178-PA; parent=FBgn0033685,FBtr0088019; dbxref=FlyBase:FBpp0087126,FlyBase_Annotation_IDs:CG13178-PA,GB_protein:AAF58577.1,REFSEQ:NP_610731,GB_protein:AAF58577,FlyMine:FBpp0087126,modMine:FBpp0087126; MD5=ec5114867512597010d8c04db29ffdad; length=302; release=r5.46; species=Dmel; [fly-062812-sfps-sandra-contam.fasta]
  • type=protein; loc=2R:complement(join(12144371..12144434,12143350..12144194)); ID=FBpp0087126; name=OSCP1-PA; parent=FBgn0033685,FBtr0088019; dbxref=FlyBase:FBpp0087126,FlyBase_Annotation_IDs:CG13178-PA,GB_protein:AAF58577.1,REFSEQ:NP_610731,GB_protein:AAF58577,FlyMine:FBpp0087126,modMine:FBpp0087126; MD5=ec5114867512597010d8c04db29ffdad; length=302; release=r6.02; species=Dmel; [fly-2014-05-contam.fasta]
  • type=protein; loc=2R:complement(join(12144371..12144434,12143350..12144194)); ID=FBpp0087126; name=OSCP1-PA; parent=FBgn0033685,FBtr0088019; dbxref=FlyBase:FBpp0087126,FlyBase_Annotation_IDs:CG13178-PA,GB_protein:AAF58577.1,REFSEQ:NP_610731,GB_protein:AAF58577,FlyMine:FBpp0087126,modMine:FBpp0087126; MD5=ec5114867512597010d8c04db29ffdad; length=302; release=r6.07; species=Dmel; [fly-08202015-contam.fasta]
  • CG13178 OS=Drosophila melanogaster GN=OSCP1 PE=2 SV=1 [DROME.fasta.20160308]
  • FBpp0087126 type=protein; loc=2R:complement(join(12144371..12144434,12143350..12144194)); ID=FBpp0087126; name=OSCP1-PA; parent=FBgn0033685,FBtr0088019; dbxref=FlyBase:FBpp0087126,FlyBase_Annotation_IDs:CG13178-PA,GB_protein:AAF58577.1,REFSEQ:NP_610731,GB_protein:AAF58577,FlyMine:FBpp0087126,modMine:FBpp0087126; MD5=ec5114867512597010d8c04db29ffdad; length=302; release=r6.09; species=Dmel; [dmel-all-translation-r6.09.fasta]
  • [fly-122215-dmel-6-09-contam.fasta]
  • type=protein; loc=2R:complement(join(12144371..12144434,12143350..12144194)); ID=FBpp0087126; name=OSCP1-PA; parent=FBgn0033685,FBtr0088019; dbxref=FlyBase:FBpp0087126,FlyBase_Annotation_IDs:CG13178-PA,GB_protein:AAF58577.1,REFSEQ:NP_610731,GB_protein:AAF58577,UniProt/TrEMBL:Q29QP4,FlyMine:FBpp0087126,modMine:FBpp0087126; MD5=ec5114867512597010d8c04db29ffdad; length=302; release=r6.14; species=Dmel; [fly-dmel-jan2017-sandracontam.fasta]
    • Organism: Drosophila melanogaster
    Length: 302 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: cilium assembly [UNKNOWN]
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLYVIDQRLK AQQIAQDKSV QVIHDVTSVL LEPKFIDSLL NGSKHNSAQL LTAEHCKFML  60
   61 NDIATCSLMR LDEQSMSKLW NLMTMVYKWQ LFVSRHQHHL LEITFRHLEA INRLYPDAKR 120
  121 HMLIDFTKNT LLDFWNASGE DAQLSIYQTN RAWLQCFNTK ISLLIRMGFQ AMDGSFIRDV 180
  181 DQDYYAEYVE SAGDNIYAKS ADQRERQQRE PNSMDQLAAQ LNINPAQSED LQPINARQFQ 240
  241 QQFEQAFGNV LFNDTAASSS GCEFVQLQPT TSASSSEKVA TSMSRGGSLL NQNLLDLYSK 300
  301 MP

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..189] MSA 8.015952 View MSA. No confident structure predictions are available.
    2 View Details [190..302] deduced N/A No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle