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Protein Overview: Sobp-PA, FBpp0311728

General Information:
Name(s) found: FBpp0311728 [FlyBase]
Sobp-PA / FBpp0087170 [FlyBase]
Description(s) found:
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  • gi|28573873|ref|NP_610703.3| sine oculis-binding protein [Drosophila melanogaster] [NCBI NR]
  • gi|28380869|gb|AAF58619.2| sine oculis-binding protein [Drosophila melanogaster] [NCBI NR]
  • gi|16183252|gb|AAL13673.1| GH22790p [Drosophila melanogaster] [NCBI NR]
  • type=protein; loc=2R:complement(7714865..7716612,7717473..7717941,7725401..7725543,7726777..7726858); ID=FBpp0311728; name=Sobp-PB; parent=FBgn0033654,FBtr0345677; dbxref=FlyBase:FBpp0311728,FlyBase_Annotation_IDs:CG8991-PB; MD5=1c26914165bffaef2c8b7821b52d37c7; length=813; release=r5.56; species=Dmel; [FlyBase]
  • The gene Sine oculis-binding protein is referred to in FlyBase by the symbol Dmel\Sobp (CG8991, FBgn0033654). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is 2R:7714668..7727035. It has the cytological map location 48C4. Its molecular function is unknown. There is experimental evidence that it is involved in the biological process</span>: compound eye development. 4 alleles are reported. The phenotype of these alleles is annotated with: eye. It has one annotated transcript and one annotated polypeptide. [FlyBase]
  • >CG8991-PA translation from_gene[CG8991 CG8991 FBgn0033654] seq_release:3 mol_weight=88200 cds_boundaries:(2R:6,892,076..6,904,066[-]) aa_length:813 transcript_info:[CG8991-RA seq_release:3] gene_info:[gene symbol:CG8991 FBgn0033654 gene_boundaries:(2R [hmr_yeast5_DM3-1_pombe.fasta]
  • (Q95TY2) GH22790p (CG8991-PA) [DrosMelano7227.FASTAC.txt]
  • CG8991-PA [Drosophila melanogaster]gi|16183252|gb|AAL13673.1| GH22790p [Drosophila melanogaster]gi|28573873|ref|NP_610703.3| CG8991-PA [Drosophila melanogaster] [nrdb_11152004_Chlamydomonas]
  • type=protein; loc=2R:complement(7714865..7716612,7717473..7717941,7725401..7725543,7726777..7726858); ID=FBpp0087170; name=Sobp-PA; parent=FBgn0033654,FBtr0088064; dbxref=GB_protein:AAF58619.2,FlyBase:FBpp0087170,FlyBase_Annotation_IDs:CG8991-PA,REFSEQ:NP [fly-100309-contam.fasta]
  • Sine oculis-binding protein CG8991-PA [Drosophila melanogaster] [nr-271106-contam.fasta]
  • CG8991-PA [Drosophila melanogaster] [nr-271106-contam.fasta]
  • GH22790p [Drosophila melanogaster] [nr-271106-contam.fasta]
  • type=protein; loc=2R:complement(7714865..7716612,7717473..7717941,7725401..7725543,7726777..7726858); ID=FBpp0087170; name=Sobp-PA; parent=FBgn0033654,FBtr0088064; dbxref=GB_protein:AAF58619.2,FlyBase:FBpp0087170,FlyBase_Annotation_IDs:CG8991-PA,REFSEQ:NP_610703,GB_protein:AAF58619; MD5=1c26914165bffaef2c8b7821b52d37c7; length=813; release=r5.16; species=Dmel; [fly-contam-His-TEV-Tub4complex.fasta]
  • type=protein; loc=2R:complement(7714865..7716612,7717473..7717941,7725401..7725543,7726777..7726858); ID=FBpp0087170; name=Sobp-PA; parent=FBgn0033654,FBtr0088064; dbxref=GB_protein:AAF58619.2,FlyBase:FBpp0087170,FlyBase_Annotation_IDs:CG8991-PA,REFSEQ:NP_610703,GB_protein:AAF58619; MD5=1c26914165bffaef2c8b7821b52d37c7; length=813; release=r5.21; species=Dmel; [Other_drosophila_na_09-09-2009_reversed.fasta]
  • GH22790p OS=Drosophila melanogaster GN=Sobp PE=1 SV=1 [UniProt_drosophila_07-01-2011_reversed.fasta]
  • type=protein; loc=2R:complement(7714865..7716612,7717473..7717941,7725401..7725543,7726777..7726858); ID=FBpp0087170; name=Sobp-PA; parent=FBgn0033654,FBtr0088064; dbxref=GB_protein:AAF58619.2,FlyBase:FBpp0087170,FlyBase_Annotation_IDs:CG8991-PA,REFSEQ:NP_610703,GB_protein:AAF58619,FlyMine:FBpp0087170,modMine:FBpp0087170; MD5=1c26914165bffaef2c8b7821b52d37c7; length=813; release=r5.46; species=Dmel; [fly-062812-sfps-sandra-contam.fasta]
  • GH22790p OS=Drosophila melanogaster GN=Sobp PE=2 SV=1 [UniProt_D_Melanogaster_07132012_07-13-2012_reversed.fasta]
  • type=protein; loc=2R:complement(join(11839272..11839353,11837896..11838038,11829968..11830436,11827360..11829107)); ID=FBpp0087170; name=Sobp-PA; parent=FBgn0033654,FBtr0088064; dbxref=GB_protein:AAF58619.2,FlyBase:FBpp0087170,FlyBase_Annotation_IDs:CG8991-PA,REFSEQ:NP_610703,GB_protein:AAF58619,FlyMine:FBpp0087170,modMine:FBpp0087170; MD5=1c26914165bffaef2c8b7821b52d37c7; length=813; release=r6.02; species=Dmel; [fly-2014-05-contam.fasta]
  • type=protein; loc=2R:complement(join(11839272..11839353,11837896..11838038,11829968..11830436,11827360..11829107)); ID=FBpp0311728; name=Sobp-PB; parent=FBgn0033654,FBtr0345677; dbxref=FlyBase:FBpp0311728,FlyBase_Annotation_IDs:CG8991-PB,GB_protein:AHN56118,REFSEQ:NP_001286320; MD5=1c26914165bffaef2c8b7821b52d37c7; length=813; release=r6.02; species=Dmel; [fly-2014-05-contam.fasta]
  • type=protein; loc=2R:complement(join(11839272..11839353,11837896..11838038,11829968..11830436,11827360..11829107)); ID=FBpp0087170; name=Sobp-PA; parent=FBgn0033654,FBtr0088064; dbxref=GB_protein:AAF58619.2,FlyBase:FBpp0087170,FlyBase_Annotation_IDs:CG8991-PA,REFSEQ:NP_610703,GB_protein:AAF58619,FlyMine:FBpp0087170,modMine:FBpp0087170; MD5=1c26914165bffaef2c8b7821b52d37c7; length=813; release=r6.07; species=Dmel; [fly-08202015-contam.fasta]
  • type=protein; loc=2R:complement(join(11839272..11839353,11837896..11838038,11829968..11830436,11827360..11829107)); ID=FBpp0311728; name=Sobp-PB; parent=FBgn0033654,FBtr0345677; dbxref=FlyBase:FBpp0311728,FlyBase_Annotation_IDs:CG8991-PB,GB_protein:AHN56118,REFSEQ:NP_001286320; MD5=1c26914165bffaef2c8b7821b52d37c7; length=813; release=r6.07; species=Dmel; [fly-08202015-contam.fasta]
  • FBpp0087170 type=protein; loc=2R:complement(join(11839272..11839353,11837896..11838038,11829968..11830436,11827360..11829107)); ID=FBpp0087170; name=Sobp-PA; parent=FBgn0033654,FBtr0088064; dbxref=GB_protein:AAF58619.2,FlyBase:FBpp0087170,FlyBase_Annotation_IDs:CG8991-PA,REFSEQ:NP_610703,GB_protein:AAF58619,FlyMine:FBpp0087170,modMine:FBpp0087170; MD5=1c26914165bffaef2c8b7821b52d37c7; length=813; release=r6.09; species=Dmel; [dmel-all-translation-r6.09.fasta]
  • FBpp0311728 type=protein; loc=2R:complement(join(11839272..11839353,11837896..11838038,11829968..11830436,11827360..11829107)); ID=FBpp0311728; name=Sobp-PB; parent=FBgn0033654,FBtr0345677; dbxref=FlyBase:FBpp0311728,FlyBase_Annotation_IDs:CG8991-PB,GB_protein:AHN56118,REFSEQ:NP_001286320; MD5=1c26914165bffaef2c8b7821b52d37c7; length=813; release=r6.09; species=Dmel; [dmel-all-translation-r6.09.fasta]
  • [fly-122215-dmel-6-09-contam.fasta]
  • type=protein; loc=2R:complement(join(11839272..11839353,11837896..11838038,11829968..11830436,11827360..11829107)); ID=FBpp0087170; name=Sobp-PA; parent=FBgn0033654,FBtr0088064; dbxref=GB_protein:AAF58619.2,FlyBase:FBpp0087170,FlyBase_Annotation_IDs:CG8991-PA,REFSEQ:NP_610703,GB_protein:AAF58619,UniProt/TrEMBL:Q95TY2,FlyMine:FBpp0087170,modMine:FBpp0087170; MD5=1c26914165bffaef2c8b7821b52d37c7; length=813; release=r6.14; species=Dmel; [fly-dmel-jan2017-sandracontam.fasta]
  • type=protein; loc=2R:complement(join(11839272..11839353,11837896..11838038,11829968..11830436,11827360..11829107)); ID=FBpp0311728; name=Sobp-PB; parent=FBgn0033654,FBtr0345677; dbxref=FlyBase:FBpp0311728,FlyBase_Annotation_IDs:CG8991-PB,GB_protein:AHN56118,REFSEQ:NP_001286320,UniProt/TrEMBL:Q95TY2; MD5=1c26914165bffaef2c8b7821b52d37c7; length=813; release=r6.14; species=Dmel; [fly-dmel-jan2017-sandracontam.fasta]
    • Organism: Drosophila melanogaster
    Length: 813 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: compound eye development [IMP]
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSFLDVRCFG KSIARKLKRA CESRKANFSP ESYIPHPVEM SAKTSPSSTS RDANVGSSSA  60
   61 IPVQIKKELP SDEIKEFAHN TMNELLGWYG FEGVDVDRLD LTAKTSRLLQ SAAAAAVANQ 120
  121 QSHQLHQLEP HPNLERKRTS LLRSSSRSSL AAAYHNNNNN NNNNNNGSSS KNNGGVGGVG 180
  181 VGSGRKSGLM NCSSTTTTPS DHDTRSSREE DSKSPHSIGK PAGAAHTDEK IDFSNCCWCH 240
  241 RPIAENAPDY LTSCDGPRYC SESCFAQSRR ASFKKAKTCD WCKHVRHAVS YVDFQDGASQ 300
  301 LQFCSEKCLN QYKMQIFCHE TQAHLDMHPH LRDQAMDAGS EAGLITPDLW LRNCRSRSAS 360
  361 PASTLSVSPG PPPAPAVSRC PDSPPSHHPS KPLISVAPVS KLLAQKSPGP GPGAPPPPPP 420
  421 PVQRHLAGKL GRRKRRGISS SLGSETVASL LQKQQQQQAP QQHQAPPTLT ADFGGSSVPL 480
  481 PPLSPMPSMQ EAPQQQQAPQ VPPTQALPRG PTAIPASYFA TPSNGVPMGH PFAGRPPPPP 540
  541 HHFMHPPPHG MMPRGFGPHF GPPLPPQMPE LGSLLGAVPP VTVMVPYPII IPLPIPIPVP 600
  601 LPVIDFYKAH LTPEERKRFD EQRAAPTRAE NAEEQEQPQP LDCSKSRSEL EEEKPDVEKL 660
  661 SEPGQELDND QEEDEKESIP KTNPDGDTNA ASPSISQESS SSPQQTHCIV RDSTQSEPEA 720
  721 DNQKLPKLKI TRLQTKRTLI QTKEAAAECS RPLRKRKRII DCDFQKMGLK EPEMANDGEQ 780
  781 SNGSSNKEAD ADPEAECNMS GSHSNSGSAK AKK

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..188] MSA 1.013971 View MSA. No confident structure predictions are available.
    2 View Details [189..368] deduced N/A No confident structure predictions are available.
    3 View Details [369..668] PSI-BLAST 4.0 Sec24
    4 View Details [669..813] MSA 5.204991 View MSA. No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.96

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle