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Protein Overview: Obp47b-PA

General Information:
Name(s) found: Obp47b-PA / FBpp0087267 [FlyBase]
Description(s) found:
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  • gi|7303620|gb|AAF58672.1| Odorant-binding protein 47b [Drosophila melanogaster] [NCBI NR]
  • gi|24652686|ref|NP_610669.1| Odorant-binding protein 47b [Drosophila melanogaster] [NCBI NR]
  • The gene Odorant-binding protein 47b is referred to in FlyBase by the symbol Dmel\Obp47b (CG13208, FBgn0033614). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is 2R:7189752..7190481. It has the cytological map location 47F1. Based on sequence similarity, it is predicted to have molecular function</span>: odorant binding. Based on sequence similarity, it is predicted to be involved in the biological process</span>: sensory perception of chemical stimulus. No alleles are reported. It has one annotated transcript and one annotated polypeptide. [FlyBase]
  • >CG13208-PA translation from_gene[CG13208 Obp47b FBgn0033614] seq_release:3 mol_weight=21889 cds_boundaries:(2R:6,366,979..6,367,705[-]) aa_length:199 transcript_info:[CG13208-RA seq_release:3] gene_info:[gene symbol:Obp47b FBgn0033614 gene_boundaries: [hmr_yeast5_DM3-1_pombe.fasta]
  • (Q9V5X0) CG13208 protein [DrosMelano7227.FASTAC.txt]
  • (AE003826) CG13208 gene product [Drosophila melanogaster] [yeastflysequest.fasta]
  • CG13208-PA [Drosophila melanogaster]gi|24652686|ref|NP_610669.1| CG13208-PA [Drosophila melanogaster] [nrdb_11152004_Chlamydomonas]
  • type=protein; loc=2R:complement(7189752..7190123,7190187..7190309,7190377..7190481); ID=FBpp0087267; name=Obp47b-PA; parent=FBgn0033614,FBtr0088171; dbxref=FlyBase:FBpp0087267,FlyBase_Annotation_IDs:CG13208-PA,GB_protein:AAF58672.1,REFSEQ:NP_610669,GB_pro [fly-100309-contam.fasta]
  • Odorant-binding protein 47b CG13208-PA [Drosophila melanogaster] [nr-271106-contam.fasta]
  • CG13208-PA [Drosophila melanogaster] [nr-271106-contam.fasta]
  • type=protein; loc=2R:complement(7189752..7190123,7190187..7190309,7190377..7190481); ID=FBpp0087267; name=Obp47b-PA; parent=FBgn0033614,FBtr0088171; dbxref=FlyBase:FBpp0087267,FlyBase_Annotation_IDs:CG13208-PA,GB_protein:AAF58672.1,REFSEQ:NP_610669,GB_protein:AAF58672; MD5=5ad0c23ab92917c3abd2238492dd592b; length=199; release=r5.16; species=Dmel; [fly-contam-His-TEV-Tub4complex.fasta]
  • type=protein; loc=2R:complement(7189752..7190123,7190187..7190309,7190377..7190481); ID=FBpp0087267; name=Obp47b-PA; parent=FBgn0033614,FBtr0088171; dbxref=FlyBase:FBpp0087267,FlyBase_Annotation_IDs:CG13208-PA,GB_protein:AAF58672.1,REFSEQ:NP_610669,GB_protein:AAF58672; MD5=5ad0c23ab92917c3abd2238492dd592b; length=199; release=r5.21; species=Dmel; [Other_drosophila_na_09-09-2009_reversed.fasta]
  • Odorant-binding protein 47b OS=Drosophila melanogaster GN=Obp47b PE=4 SV=1 [UniProt_drosophila_07-01-2011_reversed.fasta]
  • type=protein; loc=2R:complement(7189752..7190123,7190187..7190309,7190377..7190481); ID=FBpp0087267; name=Obp47b-PA; parent=FBgn0033614,FBtr0088171; dbxref=FlyBase:FBpp0087267,FlyBase_Annotation_IDs:CG13208-PA,GB_protein:AAF58672.1,REFSEQ:NP_610669,GB_protein:AAF58672,FlyMine:FBpp0087267,modMine:FBpp0087267; MD5=5ad0c23ab92917c3abd2238492dd592b; length=199; release=r5.46; species=Dmel; [fly-062812-sfps-sandra-contam.fasta]
  • type=protein; loc=2R:complement(join(11302872..11302976,11302682..11302804,11302247..11302618)); ID=FBpp0087267; name=Obp47b-PA; parent=FBgn0033614,FBtr0088171; dbxref=FlyBase:FBpp0087267,FlyBase_Annotation_IDs:CG13208-PA,GB_protein:AAF58672.1,REFSEQ:NP_610669,GB_protein:AAF58672,FlyMine:FBpp0087267,modMine:FBpp0087267; MD5=5ad0c23ab92917c3abd2238492dd592b; length=199; release=r6.02; species=Dmel; [fly-2014-05-contam.fasta]
  • type=protein; loc=2R:complement(join(11302872..11302976,11302682..11302804,11302247..11302618)); ID=FBpp0087267; name=Obp47b-PA; parent=FBgn0033614,FBtr0088171; dbxref=FlyBase:FBpp0087267,FlyBase_Annotation_IDs:CG13208-PA,GB_protein:AAF58672.1,REFSEQ:NP_610669,GB_protein:AAF58672,FlyMine:FBpp0087267,modMine:FBpp0087267; MD5=5ad0c23ab92917c3abd2238492dd592b; length=199; release=r6.07; species=Dmel; [fly-08202015-contam.fasta]
  • FBpp0087267 type=protein; loc=2R:complement(join(11302872..11302976,11302682..11302804,11302247..11302618)); ID=FBpp0087267; name=Obp47b-PA; parent=FBgn0033614,FBtr0088171; dbxref=FlyBase:FBpp0087267,FlyBase_Annotation_IDs:CG13208-PA,GB_protein:AAF58672.1,REFSEQ:NP_610669,GB_protein:AAF58672,FlyMine:FBpp0087267,modMine:FBpp0087267; MD5=5ad0c23ab92917c3abd2238492dd592b; length=199; release=r6.09; species=Dmel; [dmel-all-translation-r6.09.fasta]
  • [fly-122215-dmel-6-09-contam.fasta]
  • type=protein; loc=2R:complement(join(11302872..11302976,11302682..11302804,11302247..11302618)); ID=FBpp0087267; name=Obp47b-PA; parent=FBgn0033614,FBtr0088171; dbxref=FlyBase:FBpp0087267,FlyBase_Annotation_IDs:CG13208-PA,GB_protein:AAF58672.1,REFSEQ:NP_610669,GB_protein:AAF58672,UniProt/TrEMBL:A1Z8I9,FlyMine:FBpp0087267,modMine:FBpp0087267; MD5=5ad0c23ab92917c3abd2238492dd592b; length=199; release=r6.14; species=Dmel; [fly-dmel-jan2017-sandracontam.fasta]
    • Organism: Drosophila melanogaster
    Length: 199 amino acids

    Gene Ontology:
    Cellular Component: cellular_component [ND]
    Biological Process: sensory perception of chemical stimulus [UNKNOWN]
    transport [IEA]
    Molecular Function: odorant binding [UNKNOWN][IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSPSQLLVIF ASLALNTRLV FGQATIDCQR PPQLVDPALC CKDGGRDQVA EQCAQRILGT  60
   61 ANGQKAGGPP SLDTAACLAE CILTSSKYID EPQKLNLANI RSDLSAKFSN DTLYVETMTM 120
  121 AFSKCEPQSQ RRLAMIMQQQ QQVQQQKTQQ QQPRCSPFSA IVLGCTYMEY FKNCPDHRWT 180
  181 PNAQCTLAKA YVTQCGLGA

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..199] FFAS03 0.986 Nickel-iron hydrogenase, small subunit

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  0.395472885869348 bayes_pls_golite062009
  • protein binding
    		•  0.0805028060539605 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
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