YRC Public Data Repository - Protein Structure Prediction

Protein:	Obp47b-PA
Organism:	Drosophila melanogaster
Length:	199 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Obp47b-PA.

Description	E-value	Query Range	Subject Range
gi\|40019405 - gi\|40019405\|emb\|CAF01996.1\| putative odorant-binding protein OBPjj1 [Anopheles gambiae] gi\|158285925, gi... - gi\|158285925\|ref\|XP_001687968.1\| AGAP007289-PB [Anopheles gambiae str. PEST], gi\|157020223\|gb\|EDO646...	170.0	[0..11]	[199..8]
Obp58b-PA - The gene Odorant-binding protein 58b is referred to in FlyBase by the symbol Dmel\Obp58b (CG13518, F...	160.0	[0..6]	[195..7]
gi\|55245599, gi\|... - gi\|58378568\|ref\|XP_308532.2\| ENSANGP00000024034 [Anopheles gambiae str. PEST], gi\|55245599\|gb\|EAA454...	158.0	[0..10]	[197..18]
gi\|54636731, gi\|... - gi\|54636731\|gb\|EAL26134.1\| GA12122 [Drosophila pseudoobscura pseudoobscura], gi\|125810638\|ref\|XP_001... gi\|125810638\|ref... - GA12122-PA [Drosophila pseudoobscura], GA12122 [Drosophila pseudoobscura pseudoobscura]	151.0	[0..1]	[199..1]

Back

Predicted Domain #1

Region A:
Residues: [1-199]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSPSQLLVIF ASLALNTRLV FGQATIDCQR PPQLVDPALC CKDGGRDQVA EQCAQRILGT  60
   61 ANGQKAGGPP SLDTAACLAE CILTSSKYID EPQKLNLANI RSDLSAKFSN DTLYVETMTM 120
  121 AFSKCEPQSQ RRLAMIMQQQ QQVQQQKTQQ QQPRCSPFSA IVLGCTYMEY FKNCPDHRWT 180
  181 PNAQCTLAKA YVTQCGLGA

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	0.986
Match:	1cc1S
Description:	Nickel-iron hydrogenase, small subunit
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	0.395472885869348	bayes_pls_golite062009
protein binding	0.0805028060539605	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: