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Protein Overview: Rpb5-PA, FBpp0304268

General Information:
Name(s) found: FBpp0304268 [FlyBase]
Rpb5-PA / FBpp0087332 [FlyBase]
Description(s) found:
Found 28 descriptions.
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  • type=protein; loc=2R:complement(6785837..6786469); ID=FBpp0304268; name=Rpb5-PB; parent=FBgn0033571,FBtr0331935; dbxref=FlyBase:FBpp0304268,FlyBase_Annotation_IDs:CG11979-PB,REFSEQ:NP_001260878,GB_protein:AGB93411; MD5=a89c709b32d139e68547151f7d5b87e2; length=210; release=r5.56; species=Dmel; [FlyBase]
  • The gene Rpb5 is referred to in FlyBase by the symbol Dmel\Rpb5 (CG11979, FBgn0033571). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is 2R:6785747..6786563. It has the cytological map location 47C6. Based on sequence similarity, it is predicted to have molecular function</span>: DNA-directed RNA polymerase activity. Based on sequence similarity, it is predicted to be involved in the biological process</span>: transcription from RNA polymerase II promoter. 2 alleles are reported. No phenotypic data is available. It has one annotated transcript and one annotated polypeptide. [FlyBase]
    • Organism: Drosophila melanogaster
    Length: 210 amino acids

    Gene Ontology:
    Cellular Component: DNA-directed RNA polymerase II, core complex [ISS]
    Biological Process: transcription [IEA]
    transcription from RNA polymerase II promoter [ISS]
    Molecular Function: DNA binding [IEA]
    DNA-directed RNA polymerase activity [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDDEAETYKL WRIRKTIMQL SHDRGYLVTQ DELDQTLEQF KEMFGDKPSE KRPARSDLIV  60
   61 LVAHNDDPTD QMFVFFPEEP KIGIKTIKTY CTRMQEENIH RAIVVVQGGM TPSAKQSLVD 120
  121 MAPKYILEQF LESELLINIT EHELVPEHVV MTVEEKQELL SRYKLKENML MRIQAGDPVA 180
  181 RYFGLKRGQV VKIIRSSETA GRYISYRLVC

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..210] PSI-BLAST 75.0 Eukaryotic RPB5 N-terminal domain; Eukaryotic RPB5 C-terminal domain


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

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    Created and Maintained by: Michael Riffle